prlC:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11804:SF7 PTHR11804:SF7]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01432 PFAM:PF01432]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55486 SUPERFAMILY:55486]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11804:SF7 PTHR11804:SF7]
[http://pfam.janelia.org/family/PF01432 PF01432  Peptidase family M3]
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[[EcoCyc]]
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EcoCyc:EG11441
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11441
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001405
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1411
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011421
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:36, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020780 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000027508 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G65620 (score: 1.000; bootstrap: 100%)
  • AT5G10540 (score: 0.749)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022482 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000027246 (score: 0.470)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00023765 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00013997 (score: 1.000; bootstrap: 71%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000028637 (score: 1.000; bootstrap: 99%)
  • ENSCAFP00000011160 (score: 0.564)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017105 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-47 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-62 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041010-216 (score: 0.422)
  • ZDB-GENE-041010-216 (score: 0.422)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0219735 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039252 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11189-PA (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023776 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000304467 (score: 1.000; bootstrap: 99%)
  • ENSP00000339283 (score: 0.540)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021713 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006146 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000024527 (score: 0.531)

From Inparanoid:20070104

Mus musculus

  • MGI:1354165 (score: 1.000; bootstrap: 99%)
  • MGI:1923055 (score: 0.539)

From Inparanoid:20070104

Oryza gramene

  • Q6K9T1 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000028990 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015853 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000027045 (score: 0.523)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YCL057W (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC1F30c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000139045 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000165285 (score: 0.408)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025195001 (score: 1.000; bootstrap: 99%)
  • GSTENP00006269001 (score: 0.399)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000048194 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

PRLC

From SHIGELLACYC

E. coli O157

PRLC

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11804:SF7

Superfamily (EcoliWiki Page)

SUPERFAMILY:55486

Pfam (EcoliWiki Page)

PF01432 Peptidase family M3

EcoCyc

EcoCyc:EG11441

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11441

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001405

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1411

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011421

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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