ppc:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
touch
 
(4 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="C46ac10c74c306"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46ac10c74c306"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 125: Line 125:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="L46ac10cc9db40"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46ac10cc9db40"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00311 PFAM:PF00311]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51621 SUPERFAMILY:51621]
|
|
   
   
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00311 PF00311  Phosphoenolpyruvate carboxylase]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG10756
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10756
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000747
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0749
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0012950
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 154: Line 196:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="V46a84c5765a89"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a84c5765a89"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:37, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G68750 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187592 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • P29194 (score: 1.000; bootstrap: 100%)
  • P51059 (score: 0.963)
  • Q69LW4 (score: 0.928)
  • O82072 (score: 0.910)
  • Q8H4V1 (score: 0.904)
  • Q84XH0 (score: 0.893)
  • P29193 (score: 0.820)
  • Q9FYX8 (score: 0.797)
  • Q6EUD7 (score: 0.797)
  • Q9SAZ6 (score: 0.788)
  • P29195 (score: 0.788)
  • Q6RUV4 (score: 0.784)
  • Q84MZ3 (score: 0.772)
  • Q5JLS6 (score: 0.753)
  • Q8S2Z8 (score: 0.706)
  • Q43267 (score: 0.685)
  • Q84KR7 (score: 0.683)
  • P04711 (score: 0.682)
  • Q9FQ80 (score: 0.674)
  • Q5QNA5 (score: 0.665)
  • Q8L6C3 (score: 0.649)
  • Q9FS96 (score: 0.649)
  • Q8H1X3 (score: 0.644)
  • P15804 (score: 0.635)
  • Q5D5T4 (score: 0.216)
  • Q657S3 (score: 0.065)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000027913 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

PPC

From SHIGELLACYC

E. coli O157

PPC

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:51621

Pfam (EcoliWiki Page)

PF00311 Phosphoenolpyruvate carboxylase

EcoCyc

EcoCyc:EG10756

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10756

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000747

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0749

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012950

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ppc:Evolution&oldid=1391909"