atpD:Evolution: Difference between revisions

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{|   id="R46ac0a1b2f7cb"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46ac0a1b2f7cb"  class=" tableEdit Evolution_homologs_table"   
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!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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{|   id="W46ac0a4798f0a"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46ac0a4798f0a"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02874 PFAM:PF02874]
[http://pfam.janelia.org/family/PF02874 PF02874 ATP synthase alpha/beta family, beta-barrel domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00306 PF00306  ATP synthase alpha/beta chain, C terminal domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00006 PF00006  ATP synthase alpha/beta family, nucleotide-binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47917 SUPERFAMILY:47917]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50615 SUPERFAMILY:50615]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15184:SF8 PTHR15184:SF8]
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[[EcoCyc]]
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EcoCyc:EG10101
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10101
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000097
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0099
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012208
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:37, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024137 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000016868 (score: 0.967)
  • ENSANGP00000016863 (score: 0.583)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000023054 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G08670 (score: 1.000; bootstrap: 100%)
  • AT5G08680 (score: 1.000; bootstrap: 100%)
  • AT5G08690 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000017710 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000040050 (score: 0.166)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040018 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000229 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000202 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050522-409 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-409 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190669 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0010217 (score: 1.000; bootstrap: 100%)
  • FBgn0036568 (score: 0.221)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10801-PA (score: 1.000; bootstrap: 100%)
  • GA18845-PA (score: 0.214)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000262030 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012433 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000024772 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:107801 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • P19023 (score: 1.000; bootstrap: 99%)
  • Q6I636 (score: 1.000; bootstrap: 99%)
  • Q01859 (score: 0.963)
  • Q41534 (score: 0.799)
  • O24345 (score: 0.569)
  • O24346 (score: 0.556)
  • Q5N7P9 (score: 0.451)
  • Q5N7P8 (score: 0.429)
  • P00827 (score: 0.050)
  • Q6L392 (score: 0.050)
  • Q6ENV6 (score: 0.050)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008686 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000003965 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJR121W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC2222c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000159323 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024822001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002478 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ATPD

From SHIGELLACYC

E. coli O157

ATPD

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02874 ATP synthase alpha/beta family, beta-barrel domain

Pfam (EcoliWiki Page)

PF00306 ATP synthase alpha/beta chain, C terminal domain

Pfam (EcoliWiki Page)

PF00006 ATP synthase alpha/beta family, nucleotide-binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47917

Superfamily (EcoliWiki Page)

SUPERFAMILY:50615

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR15184:SF8

EcoCyc

EcoCyc:EG10101

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10101

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000097

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0099

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012208

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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