dksA:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0144, b0145, JW0141, msmA''<ref name='LIB:Riley_2006'/>
''ECK0144, b0145, JW0141, msmA''<ref name='LIB:Riley_2006'/>, msmA''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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RNAP-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein<ref name='LIB:Riley_2006'/>, B0145<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DksA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''RNAP-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein<ref name='LIB:Riley_2006'/>, B0145<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DksA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0144, JW0141, msmA, b0145''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dksA&loc=MG1655:160604..160149,W3110:160604..160149,DH10B:134708..134253,REL606:163455..163000 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=163455&end=163000&gene=dksA&aa=mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrlearptadlcidcktlaeirekqmag Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dksA+AND+escherichia+coli Pubmed(dksA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=dksA Textpresso(dksA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dksA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10230]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000224&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dksA&loc=MG1655%3A160604..160149,W3110%3A160604..160149,DH10B%3A134708..134253,REL606%3A163455..163000,BW2952%3A160148..160603]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=160148&end=160603&gene=dksA&aa=mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrlearptadlcidcktlaeirekqmag]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dksA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dksA]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dksA

Gene Synonym(s)

ECK0144, b0145, JW0141, msmA[1], msmA

Product Desc.

RNAP-binding transcriptional regulator of rRNA transcription[2][3]

RNAP-binding protein modulating ppGpp and iNTP regulation; reduces open complex half-life on rRNA promoters[4]

Product Synonyms(s)

RNAP-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein[1], B0145[2][1], MsmA[2][1], DksA[2][1] , ECK0144, JW0141, msmA, b0145

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links



        

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Notes

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High copy dksA suppresses mukB and TS growth and filamentation of a dnaK mutant. dksA is also a multicopy suppressor of dnaJ, grpE and prc. dksA transcription is alkali-inducible. Mutations affect chromosomal supercoiling. Binds TrxA (Kumar, 2004). HT_Cmplx24_Cyt: DksA+GreA. dksA and ybiI are paralogs.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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