rimM:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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{| id="P49b022bf82055"  class=" tableEdit New_Quickview_Table"   
{|   id="P49b022bf82055"  class=" tableEdit New_Quickview_Table"   


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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rimM''  
''rimM''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2605, b2608, JW5413, yfjA''<ref name='LIB:Riley_2006'/>
''ECK2605, b2608, JW5413, yfjA''<ref name='LIB:Riley_2006'/>, yfjA''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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16S rRNA processing protein<ref name='LIB:Riley_2006'/>, B2608<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfjA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RimM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 21K<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''16S rRNA processing protein<ref name='LIB:Riley_2006'/>, B2608<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfjA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RimM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 21K<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2605, JW5413, yfjA, b2608''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
<GO_nr />
* GO:0030490 maturation of SSU-rRNA ([http://www.geneontology.org/GO.evidence.shtml IMP])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rimM&loc=MG1655:2743940..2743392,W3110:2744574..2744026,DH10B:2835705..2835157,REL606:2667325..2666777 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2667325&end=2666777&gene=rimM&aa=mvmmskqltaqapvdpivlgkmgssygirgwlrvfsstedaesifdyqpwfiqkagqwqqvqleswkhhnqdmiiklkgvddrdaanlltnceivvdssqlpqleegdyywkdlmgcqvvttegydlgkvvdmmetgsndvlvikanlkdafgikerlvpfldgqvikkvdlttrsievdwdpgf Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rimM+AND+escherichia+coli Pubmed(rimM)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rimM Textpresso(rimM)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rimM&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11153]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001136&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rimM&loc=MG1655%3A2743940..2743392,W3110%3A2744574..2744026,DH10B%3A2835705..2835157,REL606%3A2667325..2666777,BW2952%3A2629204..2629752]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2629204&end=2629752&gene=rimM&aa=mvmmskqltaqapvdpivlgkmgssygirgwlrvfsstedaesifdyqpwfiqkagqwqqvqleswkhhnqdmiiklkgvddrdaanlltnceivvdssqlpqleegdyywkdlmgcqvvttegydlgkvvdmmetgsndvlvikanlkdafgikerlvpfldgqvikkvdlttrsievdwdpgf]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rimM+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rimM]]&nbsp;&nbsp;


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Latest revision as of 21:55, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rimM

Gene Synonym(s)

ECK2605, b2608, JW5413, yfjA[1], yfjA

Product Desc.

ribosome maturation protein[2][3]

Factor required for 16S RNA processing; 30S maturation; binds S19[4]

Product Synonyms(s)

16S rRNA processing protein[1], B2608[2][1], YfjA[2][1], RimM[2][1], 21K[2][1] , ECK2605, JW5413, yfjA, b2608

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpsP-rimM-trmD-rplS[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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other PDB (T. thermophilus): 2DOG. otherPDB (P. aeruginosa): 2F1L.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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