barA:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''barA''  
''barA''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2780, b2786, JW2757, airS(S.t.)''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK2780, b2786, JW2757, airS(S.t.)''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, airS, gacC''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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B2786<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
''B2786<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AirS<ref name='PMID:11022030'/>, airS, ECK2780, gacC, JW2757, b2786''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0009927 histidine phosphotransfer kinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=barA&loc=MG1655:2913079..2915835,W3110:2913713..2916469,REL606:2803985..2806741,DH10B:3006957..3009713 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3006957&end=3009713&gene=barA&aa=mtnyslrarmmililaptvliglllsiffvvhryndlqrqledagasiieplavsteygmslqnresigqlisvlhrrhsdivraisvydennrlfvtsnfhldpssmqlgsnvpfprqltvtrdgdimilrtpiisesyspdespssdaknsqnmlgyialeldlksvrlqqykeifissvmmlfcigialifgwrlmrdvtgpirnmvntvdrirrgqldsrvegfmlgeldmlknginsmamslaayheemqhnidqatsdlretleqmeiqnveldlakkraqeaarikseflanmshelrtplngvigftrltlkteltptqrdhlntiersannllaiindvldfskleagklilesipfplrstldevvtllahsshdkgleltlniksdvpdnvigdplrlqqiitnlvgnaikftengnidilvekralsntkvqievqirdtgigiperdqsrlfqafrqadasisrrhggtglglvitqklvnemggdisfhsqpnrgstfwfhinldlnpniiiegpstqclagkrlayvepnsaaaqctldilsetplevvysptfsalppahydmmllgiavtfrepltmqherlakavsmtdflmlalpchaqvnaeklkqdgigacllkpltptrllpaltefchhkqntllpvtdesklamtvmavddnpanlkligalledmvqhvelcdsghqaverakqmpfdlilmdiqmpdmdgiracelihqlphqqqtpviavtahamagqkekllgagmsdylakpieeerlhnlllrykpgsgissrvvtpevneivvnpnatldwqlalrqaagktdlardmlqmlldflpevrnkveeqlvgenpeglvdlihklhgscgysgvprmknlcqlieqqlrsgtkeedlepellelldemdnvareaskilg Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=barA+AND+escherichia+coli Pubmed(barA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=barA Textpresso(barA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=barA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11367]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001335&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=barA&loc=MG1655%3A2913079..2915835,W3110%3A2913713..2916469,REL606%3A2803985..2806741,DH10B%3A3006957..3009713,BW2952%3A2800227..2802983]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2800227&end=2802983&gene=barA&aa=mtnyslrarmmililaptvliglllsiffvvhryndlqrqledagasiieplavsteygmslqnresigqlisvlhrrhsdivraisvydennrlfvtsnfhldpssmqlgsnvpfprqltvtrdgdimilrtpiisesyspdespssdaknsqnmlgyialeldlksvrlqqykeifissvmmlfcigialifgwrlmrdvtgpirnmvntvdrirrgqldsrvegfmlgeldmlknginsmamslaayheemqhnidqatsdlretleqmeiqnveldlakkraqeaarikseflanmshelrtplngvigftrltlkteltptqrdhlntiersannllaiindvldfskleagklilesipfplrstldevvtllahsshdkgleltlniksdvpdnvigdplrlqqiitnlvgnaikftengnidilvekralsntkvqievqirdtgigiperdqsrlfqafrqadasisrrhggtglglvitqklvnemggdisfhsqpnrgstfwfhinldlnpniiiegpstqclagkrlayvepnsaaaqctldilsetplevvysptfsalppahydmmllgiavtfrepltmqherlakavsmtdflmlalpchaqvnaeklkqdgigacllkpltptrllpaltefchhkqntllpvtdesklamtvmavddnpanlkligalledmvqhvelcdsghqaverakqmpfdlilmdiqmpdmdgiracelihqlphqqqtpviavtahamagqkekllgagmsdylakpieeerlhnlllrykpgsgissrvvtpevneivvnpnatldwqlalrqaagktdlardmlqmlldflpevrnkveeqlvgenpeglvdlihklhgscgysgvprmknlcqlieqqlrsgtkeedlepellelldemdnvareaskilg]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=barA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=barA]]&nbsp;&nbsp;


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BarA has both sensory kinase and response regulator domains. BarA is required for catalase (KatE) expression and resistance to hydrogen peroxide, through rpoS regulation.<ref name='LIB:EcoGene'/>
BarA has both sensory kinase and response regulator domains. BarA is required for catalase (KatE) expression and resistance to hydrogen peroxide, through rpoS regulation.<ref name='LIB:EcoGene'/>. BarA is activated by short chain carbxylates.






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==References==
==References==
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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

barA

Gene Synonym(s)

ECK2780, b2786, JW2757, airS(S.t.)[1][2], airS, gacC

Product Desc.

hybrid sensory histidine kinase, in two-component regulatory system with UvrY[1] Sensor histidine protein kinase, pleiotropic; controls the expresion of csrB/C sRNAs; works in concert with UvrY response regulator[3]

Product Synonyms(s)

B2786[2][1], AirS[4], airS, ECK2780, gacC, JW2757, b2786

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): barA[2]

Regulation/Activity
Quick Links



        

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Notes

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BarA has both sensory kinase and response regulator domains. BarA is required for catalase (KatE) expression and resistance to hydrogen peroxide, through rpoS regulation.[3]. BarA is activated by short chain carbxylates.



References

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  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. ↑ Pernestig, AK et al. (2001) Identification of UvrY as the cognate response regulator for the BarA sensor kinase in Escherichia coli. J. Biol. Chem. 276 225-31 PubMed
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