yfiD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yfiD''  
''yfiD''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2577, b2579, JW2563''<ref name='LIB:Riley_2006'/>
''ECK2577, b2579, JW2563''<ref name='LIB:Riley_2006'/>, grcA, JW2563''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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pyruvate formate lyase subunit<ref name='LIB:Riley_2006'/>, B2579<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''pyruvate formate lyase subunit<ref name='LIB:Riley_2006'/>, B2579<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2577, grcA, JW2563, b2579''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=yfiD&loc=MG1655:2714471..2714088,W3110:2715105..2714722,REL606:2637942..2637559,DH10B:2806236..2805853 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2806236&end=2805853&gene=yfiD&aa=mitgiqitkaanddllnsfwlldsekgearcivakagyaedevvavsklgdieyrevpvevkpevrveggqhlnvnvlrretledavkhpekypqltirvsgyavrfnsltpeqqrdviartftesl Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yfiD+AND+escherichia+coli Pubmed(yfiD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yfiD Textpresso(yfiD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yfiD&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yfiD&loc=MG1655%3A2714471..2714088,W3110%3A2715105..2714722,REL606%3A2637942..2637559,DH10B%3A2806236..2805853,BW2952%3A2599893..2600276]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2599893&end=2600276&gene=yfiD&aa=mitgiqitkaanddllnsfwlldsekgearcivakagyaedevvavsklgdieyrevpvevkpevrveggqhlnvnvlrretledavkhpekypqltirvsgyavrfnsltpeqqrdviartftesl]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yfiD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yfiD]]&nbsp;&nbsp;


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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yfiD

Gene Synonym(s)

ECK2577, b2579, JW2563[1], grcA, JW2563

Product Desc.

stress-induced alternate pyruvate formate-lyase subunit[2][3]

Autonomous glycine radical cofactor; can reactivate pyruvate formate lyase after oxidative stress; induced by low pH or propionate; pyruvate formate lyase homolog, "spare part" for PFL[4]

Product Synonyms(s)

pyruvate formate lyase subunit[1], B2579[2][1], YfiD[2][1] , ECK2577, grcA, JW2563, b2579

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfiD[2]

Regulation/Activity
Quick Links



        

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Notes

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A yfiD mutant excretes increased levels of organic acids when grown under oxygen-starved conditions. Radical activation mediated by PflA; deactivation not mediated by AdhE. Regulated by FNR, ArcA and PdhR. HT_Cmplx8_Cyt: YfiD+PflB. HT_Cmplx9_Cyt: YfiD+TdcE.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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