ybaK:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ybaK''  
''ybaK''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0475, b0481, JW0470''<ref name='LIB:Riley_2006'/>
''ECK0475, b0481, JW0470''<ref name='LIB:Riley_2006'/>, JW0470''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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Cys-tRNA<sup>Pro</sup> and Cys-tRNA<sup>Cys</sup> deacylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Cys-tRNA<sup>Pro</sup> and Cys-tRNA<sup>Cys</sup> deacylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Cys-tRNAPro and Cys-tRNACys deacylase, tRNA editing<ref name='LIB:EcoGene'/>
Cys-tRNAPro and Cys-tRNACys deacylase, tRNA editing<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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conserved protein<ref name='LIB:Riley_2006'/>, B0481<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''conserved protein<ref name='LIB:Riley_2006'/>, B0481<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0475, JW0470, b0481''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ybaK|ybaK]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ybaK|ybaK]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ybaK&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12454]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002303&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ybaK&loc=MG1655%3A506306..505827,W3110%3A506306..505827,DH10B%3A445637..445158,REL606%3A479149..478670,BW2952%3A408586..409065]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=408586&end=409065&gene=ybaK&aa=mtpavklleknkisfqihtyehdpaetnfgdevvkklglnpdqvyktllvavngdmkhlavavtpvagqldlkkvakalgakkvemadpmvaqrstgylvggisplgqkkrlptiidapaqefatiyvsggkrgldielaagdlakildakfadiarrd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybaK+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ybaK]]&nbsp;&nbsp;


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Latest revision as of 21:44, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ybaK

Gene Synonym(s)

ECK0475, b0481, JW0470[1], JW0470

Product Desc.

Cys-tRNAPro and Cys-tRNACys deacylase[2][3]

Cys-tRNAPro and Cys-tRNACys deacylase, tRNA editing[4]

Product Synonyms(s)

conserved protein[1], B0481[2][1], YbaK[2][1] , ECK0475, JW0470, b0481

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybaK[2]

Regulation/Activity
Quick Links



        

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Notes

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YbaK has weak in vitro deacylase activity against Gly-, Ala-, Ser- Pro- and Met-tRNAs. YbaK is homologous to YeaK and an insertion domain in ProS. ybaK is a non-essential gene; YbaK is a low abundance protein. otherPDB (H. influenzae): 1DBU, 1DBX.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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