queC:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''queC''  
''queC''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ybaX, ECK0438, b0444, JW0434''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ybaX, ECK0438, b0444, JW0434''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW0434''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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enzyme in preQ<sub>0</sub> biosynthesis <ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
enzyme in preQ<sub>0</sub> biosynthesis <ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Required for 7-cyano-7-deazaguanine (preQ0) synthesis; queuosine biosynthesis, step 1<ref name='LIB:EcoGene'/>
Required for 7-cyano-7-deazaguanine (preQ0) synthesis; queuosine biosynthesis, step 1<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted aluminum resistance protein<ref name='LIB:Riley_2006'/>, B0444<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QueC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted aluminum resistance protein<ref name='LIB:Riley_2006'/>, B0444<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QueC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0438, JW0434, ybaX, b0444''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ybaX|ybaX]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ybaX|ybaX]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=queC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6245]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002856&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=queC&loc=MG1655%3A464771..464076,W3110%3A464771..464076,DH10B%3A404102..403407,REL606%3A436919..437614,BW2952%3A366835..367530]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=366835&end=367530&gene=queC&aa=mkravvvfsggqdsttclvqalqqydevhcvtfdygqrhraeidvarelalklgarahkvldvtllnelavssltrdsipvpdyepeadgipntfvpgrnilfltlaaiyayqvkaeavitgvcetdfsgypdcrdefvkalnhavslgmakdirfetplmwidkaetwaladyygkldlvrnetltcyngfkgdgcghcaacnlranglnhyladkptvmaamkqktglr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=queC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=queC]]&nbsp;&nbsp;


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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

queC

Gene Synonym(s)

ybaX, ECK0438, b0444, JW0434[1][2], JW0434

Product Desc.

enzyme in preQ0 biosynthesis [2][3]

Required for 7-cyano-7-deazaguanine (preQ0) synthesis; queuosine biosynthesis, step 1[4]

Product Synonyms(s)

predicted aluminum resistance protein[1], B0444[2][1], YbaX[2][1], QueC[2][1] , ECK0438, JW0434, ybaX, b0444

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybaX[2]

Regulation/Activity
Quick Links



        

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Notes

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Asn, Asp, Tyr, and His tRNA anticodons are modified. A. viscosus ortholog ALU1 confers aluminum tolerance when cloned in E. coli (Jo, 1997). COG0603 predicts ATPase activity. AFMB Structural Genomics target No. 25 (http://afmb.cnrs-mrs.fr/article171.html). tgt mutants lack queuosine and are have reduced survival in stationary phase. (Noguchi, 1982).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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