prfA:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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{| id="D49b02099684fc"  class=" tableEdit New_Quickview_Table"   
{|   id="D49b02099684fc"  class=" tableEdit New_Quickview_Table"   


|-
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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''prfA''  
''prfA''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1199, b1211, JW1202, sueB, uar, ups?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK1199, b1211, JW1202, sueB, uar, ups''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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peptide chain release factor RF1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
peptide chain release factor RF1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Line 41: Line 41:
Peptide chain release factor 1, RF-1; translation termination factor recognizes UAG and UAA.<ref name='LIB:EcoGene'/>
Peptide chain release factor 1, RF-1; translation termination factor recognizes UAG and UAA.<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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peptide chain release factor RF-1<ref name='LIB:Riley_2006'/>, B1211<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Uar<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SueB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PrfA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''peptide chain release factor RF-1<ref name='LIB:Riley_2006'/>, B1211<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Uar<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SueB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PrfA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1199, JW1202, sueB, uar, b1211, ups?''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hemA|hemA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:hemA|hemA]]<ref name='LIB:EcoCyc10.6'/>  
|-
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=prfA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10761]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000752&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=prfA&loc=MG1655%3A1264235..1265317,W3110%3A1266589..1267671,DH10B%3A1304476..1305558,REL606%3A1265162..1266244,BW2952%3A1152956..1154038]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1152956&end=1154038&gene=prfA&aa=mkpsivaklealherheevqallgdaqtiadqerfralsreyaqlsdvsrcftdwqqvqedietaqmmlddpemremaqdelreakekseqleqqlqvlllpkdpddernaflevragtggdeaalfagdlfrmysryaearrwrveimsasegehggykeiiakisgdgvygrlkfesgghrvqrvpatesqgrihtsactvavmpelpdaelpdinpadlridtfrssgaggqhvnttdsairithlptgivvecqdersqhknkakalsvlgarihaaemakrqqaeastrrnllgsgdrsdrnrtynfpqgrvtdhrinltlyrldevmegkldmliepiiqehqadqlaalseqe]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=prfA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=prfA]]&nbsp;&nbsp;


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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

prfA

Gene Synonym(s)

ECK1199, b1211, JW1202, sueB, uar, ups

Product Desc.

peptide chain release factor RF1[1][2]

Peptide chain release factor 1, RF-1; translation termination factor recognizes UAG and UAA.[3]

Product Synonyms(s)

peptide chain release factor RF-1[4], B1211[1][4], Uar[1][4], SueB[1][4], PrfA[1][4] , ECK1199, JW1202, sueB, uar, b1211, ups?

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hemA[1]

Regulation/Activity
Quick Links



        

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Notes

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Overexpression causes filamentous biofilm formation.[3]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. ↑ 4.0 4.1 4.2 4.3 4.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
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