PMID:16606699: Difference between revisions

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<span style = 'font-size: large'> '''Arifuzzaman, M, Maeda, M, Itoh, A, Nishikata, K, Takita, C, Saito, R, Ara, T, Nakahigashi, K, Huang, HC, Hirai, A, Tsuzuki, K, Nakamura, S, Altaf-Ul-Amin, M, Oshima, T, Baba, T, Yamamoto, N, Kawamura, T, Ioka-Nakamichi, T, Kitagawa, M, Tomita, M, Kanaya, S, Wada, C and Mori, H'''  (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12.''Genome Res.'' '''16''':686-91</span>
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|{{TableHeadingColor}} |'''Abstract''' || Protein-protein interactions play key roles in protein function and the structural organization of a cell. A thorough description of these interactions should facilitate elucidation of cellular activities, targeted-drug design, and whole cell engineering. A large-scale comprehensive pull-down assay was performed using a His-tagged Escherichia coli ORF clone library. Of 4339 bait proteins tested, partners were found for 2667, including 779 of unknown function. Proteins copurifying with hexahistidine-tagged baits on a Ni2+-NTA column were identified by MALDI-TOF MS (matrix-assisted laser desorption ionization time of flight mass spectrometry). An extended analysis of these interacting networks by bioinformatics and experimentation should provide new insights and novel strategies for E. coli systems biology.
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'''Arifuzzaman, M, Maeda, M, Itoh, A, Nishikata, K, Takita, C, Saito, R, Ara, T, Nakahigashi, K, Huang, HC, Hirai, A, Tsuzuki, K, Nakamura, S, Altaf-Ul-Amin, M, Oshima, T, Baba, T, Yamamoto, N, Kawamura, T, Ioka-Nakamichi, T, Kitagawa, M, Tomita, M, Kanaya, S, Wada, C and Mori, H'''  (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. ''Genome Res.'' '''16''':686-91
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Protein-protein interactions play key roles in protein function and the structural organization of a cell. A thorough description of these interactions should facilitate elucidation of cellular activities, targeted-drug design, and whole cell engineering. A large-scale comprehensive pull-down assay was performed using a His-tagged Escherichia coli ORF clone library. Of 4339 bait proteins tested, partners were found for 2667, including 779 of unknown function. Proteins copurifying with hexahistidine-tagged baits on a Ni2+-NTA column were identified by MALDI-TOF MS (matrix-assisted laser desorption ionization time of flight mass spectrometry). An extended analysis of these interacting networks by bioinformatics and experimentation should provide new insights and novel strategies for E. coli systems biology.
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16606699 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1457052 PMC1457052]
Online version:[http://dx.doi.org/10.1101/gr.4527806 10.1101/gr.4527806]
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|{{TableHeadingColor}} nowrap |'''Links''' ||  [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16606699 PubMed]
!align=left  |Keywords
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Escherichia coli K12/chemistry; Escherichia coli Proteins/chemistry; Escherichia coli Proteins/metabolism; Gene Library; Histidine/chemistry; Models, Biological; Open Reading Frames; Proteome/analysis; Proteomics; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
 
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Latest revision as of 04:30, 15 September 2013

Citation

Arifuzzaman, M, Maeda, M, Itoh, A, Nishikata, K, Takita, C, Saito, R, Ara, T, Nakahigashi, K, Huang, HC, Hirai, A, Tsuzuki, K, Nakamura, S, Altaf-Ul-Amin, M, Oshima, T, Baba, T, Yamamoto, N, Kawamura, T, Ioka-Nakamichi, T, Kitagawa, M, Tomita, M, Kanaya, S, Wada, C and Mori, H (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16:686-91

Abstract

Protein-protein interactions play key roles in protein function and the structural organization of a cell. A thorough description of these interactions should facilitate elucidation of cellular activities, targeted-drug design, and whole cell engineering. A large-scale comprehensive pull-down assay was performed using a His-tagged Escherichia coli ORF clone library. Of 4339 bait proteins tested, partners were found for 2667, including 779 of unknown function. Proteins copurifying with hexahistidine-tagged baits on a Ni2+-NTA column were identified by MALDI-TOF MS (matrix-assisted laser desorption ionization time of flight mass spectrometry). An extended analysis of these interacting networks by bioinformatics and experimentation should provide new insights and novel strategies for E. coli systems biology.

Links

PubMed PMC1457052 Online version:10.1101/gr.4527806

Keywords

Escherichia coli K12/chemistry; Escherichia coli Proteins/chemistry; Escherichia coli Proteins/metabolism; Gene Library; Histidine/chemistry; Models, Biological; Open Reading Frames; Proteome/analysis; Proteomics; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

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