arcA:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''arcA''  
''arcA''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4393, b4401, JW4364, dye, fexA, msp, seg, sfrA, cpxC''<ref name='LIB:Riley_2006'/>
''ECK4393, b4401, JW4364, dye, fexA, msp, seg, sfrA, cpxC''<ref name='LIB:Riley_2006'/>, cpxC''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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B4401 product<ref name='LIB:EcoCyc10.6'/>, negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) product<ref name='LIB:EcoCyc10.6'/>, CpxC product<ref name='LIB:EcoCyc10.6'/>, Dye product<ref name='LIB:EcoCyc10.6'/>, FexA product<ref name='LIB:EcoCyc10.6'/>, Msp product<ref name='LIB:EcoCyc10.6'/>, Seg product<ref name='LIB:EcoCyc10.6'/>, SfrA product<ref name='LIB:EcoCyc10.6'/>, respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, unphosphorylated respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, unmodified respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, ArcA control protein product<ref name='LIB:EcoCyc10.6'/>, dye resistance protein product<ref name='LIB:EcoCyc10.6'/>, aerobic respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>  
''B4401 <ref name='LIB:EcoCyc10.6'/>, negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) <ref name='LIB:EcoCyc10.6'/>, CpxC <ref name='LIB:EcoCyc10.6'/>, Dye <ref name='LIB:EcoCyc10.6'/>, FexA <ref name='LIB:EcoCyc10.6'/>, Msp <ref name='LIB:EcoCyc10.6'/>, Seg <ref name='LIB:EcoCyc10.6'/>, SfrA <ref name='LIB:EcoCyc10.6'/>, respiration control protein ArcA <ref name='LIB:EcoCyc10.6'/>, unphosphorylated respiration control protein ArcA <ref name='LIB:EcoCyc10.6'/>, unmodified respiration control protein ArcA <ref name='LIB:EcoCyc10.6'/>, ArcA control protein <ref name='LIB:EcoCyc10.6'/>, dye resistance protein <ref name='LIB:EcoCyc10.6'/>, aerobic respiration control protein ArcA <ref name='LIB:EcoCyc10.6'/> , cpxC, dye, ECK4393, fexA, JW4364, msp, seg, sfrA, b4401''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP])
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP])
'''Biological Process'''
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=arcA&loc=MG1655:4638329..4637613,W3110:4644986..4644270,REL606:4628466..4627750,DH10B:4684791..4684075 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4684791&end=4684075&gene=arcA&aa=mqtphilivedelvtrntlksifeaegydvfeatdgaemhqilseydinlvimdinlpgknglllarelreqanvalmfltgrdnevdkilgleigaddyitkpfnpreltirarnllsrtmnlgtvseerrsvesykfngweldinsrsligpdgeqyklprseframlhfcenpgkiqsraellkkmtgrelkphdrtvdvtirrirkhfestpdtpeiiatihgegyrfcgdled Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=arcA+AND+escherichia+coli Pubmed(arcA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=arcA Textpresso(arcA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=arcA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10061]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000057&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=arcA&loc=MG1655%3A4638329..4637613,W3110%3A4644986..4644270,REL606%3A4628466..4627750,DH10B%3A4684791..4684075,BW2952%3A4576097..4576813]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4576097&end=4576813&gene=arcA&aa=mqtphilivedelvtrntlksifeaegydvfeatdgaemhqilseydinlvimdinlpgknglllarelreqanvalmfltgrdnevdkilgleigaddyitkpfnpreltirarnllsrtmnlgtvseerrsvesykfngweldinsrsligpdgeqyklprseframlhfcenpgkiqsraellkkmtgrelkphdrtvdvtirrirkhfestpdtpeiiatihgegyrfcgdled]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=arcA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=arcA]]&nbsp;&nbsp;


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Latest revision as of 21:53, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

arcA

Gene Synonym(s)

ECK4393, b4401, JW4364, dye, fexA, msp, seg, sfrA, cpxC[1], cpxC

Product Desc.

ArcA transcriptional dual regulator[2][3] DNA-binding response regulator in two-component regulatory system with ArcB or CpxA product Response regulator, represses aerobic genes anaerobically; also activates some anaerobic genes; phosphorylated by ArcB[4]

Product Synonyms(s)

B4401 [2], negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) [2], CpxC [2], Dye [2], FexA [2], Msp [2], Seg [2], SfrA [2], respiration control protein ArcA [2], unphosphorylated respiration control protein ArcA [2], unmodified respiration control protein ArcA [2], ArcA control protein [2], dye resistance protein [2], aerobic respiration control protein ArcA [2] , cpxC, dye, ECK4393, fexA, JW4364, msp, seg, sfrA, b4401

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): arcA[2]

Regulation/Activity
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Notes

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References

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  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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