basS:Quickview: Difference between revisions

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Latest revision as of 21:52, 27 May 2013

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Quickview

Standard Name	basS
Gene Synonym(s)	ECK4105, b4112, JW4073, pmrB^[1], pmrB
Product Desc.	sensory histidine kinase in two-component regulatory system with BasR^[1] Histidine protein kinase sensor Lipid A modification genes; two-component system involved in polymyxin resistance that senses high extracellular Fe(2+)^[2]
Product Synonyms(s)	B4112^[3]^[1], PmrB^[3]^[1], ECK4105, JW4073, pmrB, b4112
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): basRS^[3]
Regulation/Activity
Quick Links
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Notes

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BasR is the cognate response regulator of the BasSR two-component system. The BasSR regulon has been primarily characterized in Salmonella; unlike E. coli, Salmonella also activates PmrAB(BasSR) in low Mg(2+), mediated by PhoPQ and the PmrD protein.^[2]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoGene-2] 2.0 ^2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:EcoCyc10.6-3] 3.0 ^3.1 ^3.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[1]

[2]

[3]

@@ Line 23: / Line 23: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->{{Quickview_table_help}}
+****************************************************************************************** -->
-{|  id="I49aee0f70ba7e"  class=" tableEdit New_Quickview_Table"
+{|   id="I49aee0f70ba7e"  class=" tableEdit New_Quickview_Table"
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@@ Line 33: / Line 33: @@
 !align=left {{table_heading_style}} |Gene Synonym(s)
 ||
-''ECK4105, b4112, JW4073, pmrB''<ref name='LIB:Riley_2006'/>
+''ECK4105, b4112, JW4073, pmrB''<ref name='LIB:Riley_2006'/>, pmrB''
 |-
 !align=left {{table_heading_style}} |Product Desc.
 ||
-sensory histidine kinase in two-component regulatory system with BasR product<ref name='LIB:Riley_2006'/>
+sensory histidine kinase in two-component regulatory system with BasR<ref name='LIB:Riley_2006'/>
 Histidine protein kinase sensor Lipid A modification genes; two-component system involved in polymyxin resistance that senses high extracellular Fe(2+)<ref name='LIB:EcoGene'/>
@@ Line 43: / Line 43: @@
 !align=left {{table_heading_style}} |Product Synonyms(s)
 ||
-B4112<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''B4112<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ECK4105, JW4073, pmrB, b4112''
 |-
 !align=left {{table_heading_style}} |Function from GO
@@ Line 63: / Line 63: @@
 !align=left {{table_heading_style}} |Quick Links
 ||
-[http://ecoliwiki.net/tools/display_dna.php?gene=basS&loc=MG1655:4331295..4330204,W3110:4337950..4336859,REL606:4311986..4310895,DH10B:4431657..4430566 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4431657&end=4430566&gene=basS&aa=mhflrrpislrqrliltigaillvfelisvfwlwhesteqiqlfeqalrdnrnndrhimreireavaslivpgvfmvsltlficyqavrritrplaelqkeleartadnltpiaihsatleieavvsalndlvsrltstldnerlftadvahelrtplagvrlhlellakthhidvaplvarldqmmesvsqllqlaragqsfssgnyqhvklledvilpsydelstmldqrqqtlllpesaaditvqgdatllrmllrnlvenahryspqgsnimiklqeddgavmavedegpgideskcgelskafvrmdsryggiglglsivsritqlhhgqfflqnrqetsgtrawvrlkkdqyvanqi Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=basS+AND+escherichia+coli Pubmed(basS)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=basS Textpresso(basS)]
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=basS&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11614]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001562&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=basS&loc=MG1655%3A4331295..4330204,W3110%3A4337950..4336859,REL606%3A4311986..4310895,DH10B%3A4431657..4430566,BW2952%3A4268939..4270030]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4268939&end=4270030&gene=basS&aa=mhflrrpislrqrliltigaillvfelisvfwlwhesteqiqlfeqalrdnrnndrhimreireavaslivpgvfmvsltlficyqavrritrplaelqkeleartadnltpiaihsatleieavvsalndlvsrltstldnerlftadvahelrtplagvrlhlellakthhidvaplvarldqmmesvsqllqlaragqsfssgnyqhvklledvilpsydelstmldqrqqtlllpesaaditvqgdatllrmllrnlvenahryspqgsnimiklqeddgavmavedegpgideskcgelskafvrmdsryggiglglsivsritqlhhgqfflqnrqetsgtrawvrlkkdqyvanqi]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=basS+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=basS]]&nbsp;&nbsp;
 |- class="tableEdit_footer"

basS:Quickview: Difference between revisions

Latest revision as of 21:52, 27 May 2013

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