cydA:Quickview: Difference between revisions

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{|   id="N49aee2cb240c1"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[cydA:Gene|''cydA]]'' (synonyms: ''ECK0721, b0733, JW0722, cyd-1'')<ref name='LIB:Riley_2006'/>
''cydA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[cydA:Gene_Product(s)|CydA product]]<ref name='LIB:Riley_2006'/>: cytochrome d terminal oxidase, subunit I product, B0733 product
''ECK0721, b0733, JW0722, cyd-1''<ref name='LIB:Riley_2006'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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cytochrome <i>bd</i>-I terminal oxidase subunit I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
cytochrome <i>bd</i>-I terminal oxidase subunit I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:cytochrome <i>bd</i>-I terminal oxidase|cytochrome <i>bd</i>-I terminal oxidase]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:cytochrome bd-I terminal oxidase|cytochrome bd-I terminal oxidase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Cytochrome d (bd-I) terminal oxidase subunit I; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''cytochrome d terminal oxidase, subunit I<ref name='LIB:Riley_2006'/>, B0733<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CydA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0721, JW0722, b0733''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:cydAB|cydAB]]<ref name='LIB:EcoCyc10.6'/>, OP00140  
transcription unit(s): [[:Category:Txn_unit:cydAB|cydAB]]<ref name='LIB:EcoCyc10.6'/>, OP00140  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=cydA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10173]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000168&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=cydA&loc=MG1655%3A770681..772249,W3110%3A771880..773448,DH10B%3A823273..824841,REL606%3A752340..753908,BW2952%3A673441..675009]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=673441&end=675009&gene=cydA&aa=mmldivelsrlqfaltamyhflfvpltlgmafllaimetvyvlsgkqiykdmtkfwgklfginfalgvatgltmefqfgtnwsyyshyvgdifgaplaieglmafflestfvglfffgwdrlgkvqhmcvtwlvalgsnlsalwilvangwmqnpiasdfnfetmrmemvsfselvlnpvaqvkfvhtvasgyvtgamfilgisawymlkgrdfafakrsfaiaasfgmaavlsvivlgdesgyemgdvqktklaaieaewetqpapaaftlfgipdqeeetnkfaiqipyalgiiatrsvdtpviglkelmvqheerirngmkayslleqlrsgstdqavrdqfnsmkkdlgyglllkrytpnvadateaqiqqatkdsiprvaplyfafrimvacgflllaiialsfwsvirnrigekkwllraalygiplpwiaveagwfvaeygrqpwaigevlptavanssltagdlifsmvlicglytlflvaelflmfkfarlgpsslktgryhfeqsstttqpar]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cydA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cydA]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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H-NS, Fnr and ArcA regulons.  ArcA-P antagonizes H-NS repression of cydAB in response to limiting oxygen.  Biofilm microarray result was validated with RT-PCR. HT_Cmplx29_Mem: AppC+CydA.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

cydA

Gene Synonym(s)

ECK0721, b0733, JW0722, cyd-1[1]

Product Desc.

cytochrome bd-I terminal oxidase subunit I[2][3];

Component of cytochrome bd-I terminal oxidase[2][3]

Cytochrome d (bd-I) terminal oxidase subunit I; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr[4]

Product Synonyms(s)

cytochrome d terminal oxidase, subunit I[1], B0733[2][1], CydA[2][1] , ECK0721, JW0722, b0733

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): cydAB[2], OP00140

Regulation/Activity
Quick Links



        

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Notes

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H-NS, Fnr and ArcA regulons. ArcA-P antagonizes H-NS repression of cydAB in response to limiting oxygen. Biofilm microarray result was validated with RT-PCR. HT_Cmplx29_Mem: AppC+CydA.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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