der:Quickview: Difference between revisions

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{|   id="J49aee3972af55" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[der:Gene|''der]]'' (synonyms: ''ECK2507, b2511, JW5403, engA, yfgK'')<ref name='LIB:Riley_2006'/>
''der''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[der:Gene_Product(s)|Der product]]<ref name='LIB:Riley_2006'/>: predicted GTP-binding protein product, B2511 product, YfgK product, EngA product
''ECK2507, b2511, JW5403, engA, yfgK''<ref name='LIB:Riley_2006'/>, yfgK''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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50S ribosomal subunit stability factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
50S ribosomal subunit stability factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Multicopy suppressor of ftsJ; depleted cells form filaments with defective chromosome segregation; GTPase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted GTP-binding protein<ref name='LIB:Riley_2006'/>, B2511<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Der<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EngA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2507, engA, JW5403, yfgK, b2511''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfgL-der|yfgL-der]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yfgL-der|yfgL-der]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=der&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7319]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003891&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=der&loc=MG1655%3A2635378..2633906,W3110%3A2636012..2634540,DH10B%3A2727143..2725671,BW2952%3A2519711..2521183]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2519711&end=2521183&gene=der&aa=mrclmiyknealnmvpvvalvgrpnvgkstlfnrltrtrdalvadfpgltrdrkygraeiegreficidtggidgtedgvetrmaeqsllaieeadvvlfmvdaraglmpadeaiakhlrsrekptflvanktdgldpdqavvdfyslglgeiypiaashgrgvlsllehvllpwmedlapqeevdedaeywaqfeaeengeeeeeddfdpqslpiklaivgrpnvgkstltnrilgeervvvydmpgttrdsiyipmerdgreyvlidtagvrkrgkitdavekfsviktlqaiedanvvmlvidaregisdqdlsllgfilnsgrslvivvnkwdglsqevkeqvketldfrlgfidfarvhfisalhgsgvgnlfesvreaydsstrrvgtsmltrimtmavedhqpplvrgrrvklkyahaggynppivvihgnqvkdlpdsykrylmnyfrksldvmgspiriqfkegenpyankrntltptqmrkrkrlmkhikknk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=der+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=der]]&nbsp;&nbsp;


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{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
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===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
Der-depletion alters ribosome stability and/or biogenesis, as evidenced by polysome profiles (Bharat, 2006). Der has two tandem GTP-binding domains. der is an essential gene.<ref name='LIB:EcoGene'/>




Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

der

Gene Synonym(s)

ECK2507, b2511, JW5403, engA, yfgK[1], yfgK

Product Desc.

50S ribosomal subunit stability factor[2][3]

Multicopy suppressor of ftsJ; depleted cells form filaments with defective chromosome segregation; GTPase[4]

Product Synonyms(s)

predicted GTP-binding protein[1], B2511[2][1], Der[2][1], YfgK[2][1], EngA[2][1] , ECK2507, engA, JW5403, yfgK, b2511

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfgL-der[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Der-depletion alters ribosome stability and/or biogenesis, as evidenced by polysome profiles (Bharat, 2006). Der has two tandem GTP-binding domains. der is an essential gene.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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