folK:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
update QV table
touch
 
(7 intermediate revisions by the same user not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{| id="Y49aee62d30c6f"  class=" tableEdit New_Quickview_Table"   
{|   id="Y49aee62d30c6f"  class=" tableEdit New_Quickview_Table"   


|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''folK''  
''folK''
|-
|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK0141, b0142, JW0138''<ref name='LIB:Riley_2006'/>
''ECK0141, b0142, JW0138''<ref name='LIB:Riley_2006'/>, JW0138''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 43: Line 43:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase<ref name='LIB:Riley_2006'/>, HPPK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0142<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FolK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase<ref name='LIB:Riley_2006'/>, HPPK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0142<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FolK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0141, JW0138, b0142''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
||
||
'''Biological Process'''
<GO_nr />
* GO:0046656 folic acid biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Molecular Function'''
* GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
 
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
Line 67: Line 63:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://ecoliwiki.net/tools/display_dna.php?gene=folK&loc=MG1655:157732..157253,W3110:157732..157253,DH10B:131836..131357,REL606:160583..160104 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=160583&end=160104&gene=folK&aa=mtvayiaigsnlaspleqvnaalkalgdipeshiltvssfyrtpplgpqdqpdylnaavaletslapeellnhtqrielqqgrvrkaerwgprtldldimlfgnevinterltvphydmknrgfmlwplfeiapelvfpdgemlrqilhtrafdklnkw Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=folK+AND+escherichia+coli Pubmed(folK)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=folK Textpresso(folK)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=folK&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11374]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001342&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=folK&loc=MG1655%3A157732..157253,W3110%3A157732..157253,DH10B%3A131836..131357,REL606%3A160583..160104,BW2952%3A157252..157731]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=157252&end=157731&gene=folK&aa=mtvayiaigsnlaspleqvnaalkalgdipeshiltvssfyrtpplgpqdqpdylnaavaletslapeellnhtqrielqqgrvrkaerwgprtldldimlfgnevinterltvphydmknrgfmlwplfeiapelvfpdgemlrqilhtrafdklnkw]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=folK+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=folK]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:50, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

folK

Gene Synonym(s)

ECK0141, b0142, JW0138[1], JW0138

Product Desc.

H2PTERIDINEPYROPHOSPHOKIN[2][3]

6-Hydroxymethyl-7,8-dihydropterin pyrophosphokinase; monomeric[4]

Product Synonyms(s)

2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase[1], HPPK[2][1], B0142[2][1], FolK[2][1] , ECK0141, JW0138, b0142

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pcnB-folK[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


HPPK active center is formed once both substrates, ATP and HP, are bound and this assembly results in confirmational changes primarily in catalytic loops 1-3; catalytic loop 3 moves in the opposite direction upon binding of the nucleotide. Catalytic loop 3 is involved in ternary complex stabilization and is necessary for catalysis.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=folK:Quickview&oldid=1397112"