gph:Quickview: Difference between revisions

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Quickview

Standard Name	gph
Gene Synonym(s)	ECK3372, b3385, JW3348, yhfE^[1], yhfE
Product Desc.	GPH^[2]^[3] Phosphoglycolate phosphatase; in dam operon; involved in degradation of 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends; HAD10^[4]
Product Synonyms(s)	phosphoglycolate phosphatase^[1], B3385^[2]^[1], YhfE^[2]^[1], Gph^[2]^[1] , ECK3372, JW3348, yhfE, b3385
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): rpe-gph-trpS^[2], dam-rpe-gph-trpS^[2], damX-dam-rpe-gph-trpS^[2], aroKB-damX-dam-rpe-gph-trpS^[2]
Regulation/Activity
Quick Links
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Notes

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HAD superfamily. gph is a non-essential gene. Gph has weak phosphoramidase activity in vitro (Kuznetsova, 2006).^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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[2]

[3]

[4]

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+-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
 <noinclude>{{TabsTop}}
 {{Tab On|Quickview|gph}}{{Tab|Gene|gph}}{{Tab|Gene Product(s)|gph}}{{Tab|Expression|gph}}{{Tab|Evolution|gph}}{{Tab|On One Page|gph}}{{TabsBottom}}
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+{|   id="W49aee7f276e91"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[gph:Gene|''gph]]'' (synonyms: ''ECK3372, b3385, JW3348, yhfE'')<ref name='LIB:Riley_2006'/>
+''gph''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[gph:Gene_Product(s)|Gph product]]<ref name='LIB:Riley_2006'/>: phosphoglycolate phosphatase product, B3385 product, YhfE product
+''ECK3372, b3385, JW3348, yhfE''<ref name='LIB:Riley_2006'/>, yhfE''
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
-GPH-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+GPH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Phosphoglycolate phosphatase; in dam operon; involved in degradation of 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends; HAD10<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''phosphoglycolate phosphatase<ref name='LIB:Riley_2006'/>, B3385<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Gph<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3372, JW3348, yhfE, b3385''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
 transcription unit(s): [[:Category:Txn_unit:rpe-gph-trpS|rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:dam-rpe-gph-trpS|dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:damX-dam-rpe-gph-trpS|damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:aroKB-damX-dam-rpe-gph-trpS|aroKB-damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
 |-
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+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gph&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11871]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001802&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gph&loc=MG1655%3A3512411..3511653,W3110%3A4126027..4126785,REL606%3A3443071..3442313,DH10B%3A3610156..3609398,BW2952%3A3398810..3399568]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3398810&end=3399568&gene=gph&aa=mnkfedirgvafdldgtlvdsapglaaavdmalyalelpvageervitwigngadvlmeraltwarqeratqrktmgkppvdddipaeeqvrilrklfdryygevaeegtflfphvadtlgalqakglplglvtnkptpfvapllealdiakyfsvviggddvqnkkphpdplllvaermgiapqqmlfvgdsrndiqaakaagcpsvgltygynygeaidlsqpdviyqsindllpalglphsenqesknd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gph+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gph]]&nbsp;&nbsp;
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 <protect><!--Quickview_notes--></protect>
-==Notes==
+===Notes===
+{{BacktoTop}}
+HAD superfamily. gph is a non-essential gene. Gph has weak phosphoramidase activity in vitro (Kuznetsova, 2006).<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

gph:Quickview: Difference between revisions

Latest revision as of 21:49, 27 May 2013

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