gph:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="W49aee7f276e91"  class=" tableEdit New_Quickview_Table" 
 
|-
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[gph:Gene|''gph]]'' (synonyms: ''ECK3372, b3385, JW3348, yhfE'')<ref name='LIB:Riley_2006'/>
''gph''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[gph:Gene_Product(s)|Gph product]]<ref name='LIB:Riley_2006'/>: phosphoglycolate phosphatase product, B3385 product, YhfE product
''ECK3372, b3385, JW3348, yhfE''<ref name='LIB:Riley_2006'/>, yhfE''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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GPH-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
GPH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Phosphoglycolate phosphatase; in dam operon; involved in degradation of 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends; HAD10<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''phosphoglycolate phosphatase<ref name='LIB:Riley_2006'/>, B3385<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Gph<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3372, JW3348, yhfE, b3385''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rpe-gph-trpS|rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:dam-rpe-gph-trpS|dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:damX-dam-rpe-gph-trpS|damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:aroKB-damX-dam-rpe-gph-trpS|aroKB-damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rpe-gph-trpS|rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:dam-rpe-gph-trpS|dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:damX-dam-rpe-gph-trpS|damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:aroKB-damX-dam-rpe-gph-trpS|aroKB-damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>  
|-
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gph&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11871]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001802&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gph&loc=MG1655%3A3512411..3511653,W3110%3A4126027..4126785,REL606%3A3443071..3442313,DH10B%3A3610156..3609398,BW2952%3A3398810..3399568]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3398810&end=3399568&gene=gph&aa=mnkfedirgvafdldgtlvdsapglaaavdmalyalelpvageervitwigngadvlmeraltwarqeratqrktmgkppvdddipaeeqvrilrklfdryygevaeegtflfphvadtlgalqakglplglvtnkptpfvapllealdiakyfsvviggddvqnkkphpdplllvaermgiapqqmlfvgdsrndiqaakaagcpsvgltygynygeaidlsqpdviyqsindllpalglphsenqesknd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gph+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gph]]&nbsp;&nbsp;
 
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<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
HAD superfamily. gph is a non-essential gene. Gph has weak phosphoramidase activity in vitro (Kuznetsova, 2006).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gph

Gene Synonym(s)

ECK3372, b3385, JW3348, yhfE[1], yhfE

Product Desc.

GPH[2][3]

Phosphoglycolate phosphatase; in dam operon; involved in degradation of 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends; HAD10[4]

Product Synonyms(s)

phosphoglycolate phosphatase[1], B3385[2][1], YhfE[2][1], Gph[2][1] , ECK3372, JW3348, yhfE, b3385

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpe-gph-trpS[2], dam-rpe-gph-trpS[2], damX-dam-rpe-gph-trpS[2], aroKB-damX-dam-rpe-gph-trpS[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


HAD superfamily. gph is a non-essential gene. Gph has weak phosphoramidase activity in vitro (Kuznetsova, 2006).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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