gspD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[gspD:Gene|''gspD]]'' (synonyms: ''ECK3312, b3325, JW5707, yheF'')<ref name='LIB:Riley_2006'/>
''gspD''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[gspD:Gene_Product(s)|GspD product]]<ref name='LIB:Riley_2006'/>: general secretory pathway component, cryptic product, B3325 product, YheF product
''ECK3312, b3325, JW5707, yheF''<ref name='LIB:Riley_2006'/>, yheF''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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putative protein secretion protein for export<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
putative protein secretion protein for export<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:GspC-O secreton  complex|GspC-O secreton  complex]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:GspC-O secreton  complex|GspC-O secreton  complex]]<ref name='LIB:EcoCyc11.1'/>


Part of H-NS-silenced gsp divergon, type II protein secretion; OM secretin; cloned gsp divergon secretes ChiA<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''general secretory pathway component, cryptic<ref name='LIB:Riley_2006'/>, B3325<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YheF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GspD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3312, JW5707, yheF, b3325''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:gspC|gspC]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
transcription unit(s): [[:Category:Txn_unit:gspC|gspC]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gspD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7703]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004248&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gspD&loc=MG1655%3A3454399..3456351,W3110%3A4184039..4182087,REL606%3A3384282..3386234,DH10B%3A3552144..3554096,BW2952%3A3341556..3343508]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3341556&end=3343508&gene=gspD&aa=mdcvmkglnkitccllaallmpcaghaeneqyganfnnadirqfveivgqhlgktilidpsvqgtisvrsndtfsqqeyyqfflsildlygysvitldngflkvvrsanvktspgmiadssrpgvgdelvtrivplenvpardlapllrqmmdagsvgnvvhyepsnvliltgrastinklievikrvdvigtekqqiihleyasaedlaeilnqliseshgksqmpallsakivadkrtnsliisgpekarqritsllksldveeseegntrvyylkyakatnlvevltgvseklkdekgnarkpsssgamdnvaitadeqtnslvitadqsvqeklatviarldirraqvlveaiivevqdgnglnlgvqwanknvgaqqftntglpifnaaqgvadykknggitsanpawdmfsayngmaagffngdwgvlltalasnnkndilatpsivtldnklasfnvgqdvpvlsgsqttsgdnvfntverktvgtklkvtpqvnegdavlleieqevssvdsssnstlgptfntrtiqnavlvktgetvvlggllddfskeqvskvpllgdiplvgqlfrytsterakrnlmvfirptiirdddvyrslskekytryrqeqqqridgkskalvgsedlpvldentfnshapapssr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gspD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gspD]]&nbsp;&nbsp;


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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gspD

Gene Synonym(s)

ECK3312, b3325, JW5707, yheF[1], yheF

Product Desc.

putative protein secretion protein for export[2][3];

Component of GspC-O secreton complex[3]

Part of H-NS-silenced gsp divergon, type II protein secretion; OM secretin; cloned gsp divergon secretes ChiA[4]

Product Synonyms(s)

general secretory pathway component, cryptic[1], B3325[2][1], YheF[2][1], GspD[2][1] , ECK3312, JW5707, yheF, b3325

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gspC[2][3]

Regulation/Activity
Quick Links



        

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Notes

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A divergon is a regulon comprised of two adjacent divergent operons or genes.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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