kdsC:Quickview: Difference between revisions

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{{Tab On|Quickview|kdsC}}{{Tab|Gene|kdsC}}{{Tab|Gene Product(s)|kdsC}}{{Tab|Expression|kdsC}}{{Tab|Evolution|kdsC}}{{Tab|On One Page|kdsC}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[kdsC:Gene|''kdsC]]'' (synonyms: ''ECK3187, b3198, JW3165, yrbI, yrbJ'')<ref name='LIB:Riley_2006'/>
''kdsC''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[kdsC:Gene_Product(s)|KdsC product]]<ref name='LIB:Riley_2006'/>: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase<ref name='LIB:Riley_2006'/>, B3198<ref name='LIB:EcoCyc10.6'/>, YrbJ<ref name='LIB:EcoCyc10.6'/>, KdsC<ref name='LIB:EcoCyc10.6'/>, YrbI<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate phosphatase|3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate phosphatase]]<ref name='LIB:EcoCyc10.6'/>
''ECK3187, b3198, JW3165, yrbI, yrbJ''<ref name='LIB:Riley_2006'/>, yrbJ''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate phosphatase monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate phosphatase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate phosphatase|3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate phosphatase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; KDO 8-P phosphatase; LPS biosynthesis; HAD22<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''3-deoxy-D-manno-octulosonate 8-phosphate phosphatase<ref name='LIB:Riley_2006'/>, B3198<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YrbJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdsC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YrbI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3187, JW3165, yrbI, yrbJ, b3198''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s):   
transcription unit(s):   
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=kdsC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7663]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004211&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=kdsC&loc=MG1655%3A3340295..3340861,W3110%3A3342128..3342694,DH10B%3A3438040..3438606,REL606%3A3277508..3278074,BW2952%3A3227443..3228009]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3227443&end=3228009&gene=kdsC&aa=mskagaslatcygpvsadviakaenirllildvdgvlsdgliymgnngeelkafnvrdgygircaltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenvayvgddlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkldeakgqsi]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdsC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=kdsC]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
YrbI is renamed as KdsC (personal comm., R.W. Woodard, Univ. of Mich.). KdsC native N-terminal sequence is from E. coli B. Cloned kdsC is from BL21. KdsC is tetrameric and requires a divalent metal cofactor. HAD superfamily.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

kdsC

Gene Synonym(s)

ECK3187, b3198, JW3165, yrbI, yrbJ[1], yrbJ

Product Desc.

3-deoxy-D-manno-octulosonate 8-phosphate phosphatase[2][3];

Component of [[:Category:Complex:3-deoxy-D-manno-octulosonate 8-phosphate phosphatase|3-deoxy-D-manno-octulosonate 8-phosphate phosphatase]][2][3]

3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; KDO 8-P phosphatase; LPS biosynthesis; HAD22[4]

Product Synonyms(s)

3-deoxy-D-manno-octulosonate 8-phosphate phosphatase[1], B3198[2][1], YrbJ[2][1], KdsC[2][1], YrbI[2][1] , ECK3187, JW3165, yrbI, yrbJ, b3198

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


YrbI is renamed as KdsC (personal comm., R.W. Woodard, Univ. of Mich.). KdsC native N-terminal sequence is from E. coli B. Cloned kdsC is from BL21. KdsC is tetrameric and requires a divalent metal cofactor. HAD superfamily.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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