rpsI:Quickview: Difference between revisions

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{|   id="F49b023a268bb2"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rpsI:Gene|''rpsI]]'' (synonyms: ''ECK3219, b3230, JW3199'')<ref name='LIB:Riley_2006'/>
''rpsI''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rpsI:Gene_Product(s)|RpsI product]]<ref name='LIB:Riley_2006'/>: 30S ribosomal subunit protein S9 product, B3230 product
''ECK3219, b3230, JW3199''<ref name='LIB:Riley_2006'/>, JW3199''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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30S ribosomal subunit protein S9<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
30S ribosomal subunit protein S9<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:30S ribosomal subunit|30S ribosomal subunit]]<ref name='LIB:EcoCyc10.6'/>,[[:Category:Complex:ribosome|ribosome]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:30S ribosomal subunit|30S ribosomal subunit]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ribosome|ribosome]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


30S ribosomal subunit protein S9<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''30S ribosomal subunit protein S9<ref name='LIB:Riley_2006'/>, B3230<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RpsI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3219, JW3199, b3230''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rplM-rpsI|rplM-rpsI]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rplM-rpsI|rplM-rpsI]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rpsI&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10908]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000899&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rpsI&loc=MG1655%3A3376229..3375837,W3110%3A3378062..3377670,DH10B%3A3473974..3473582,REL606%3A3306105..3305713,BW2952%3A3262985..3263377]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3262985&end=3263377&gene=rpsI&aa=maenqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvekldlyitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrkarrrpqfskr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rpsI+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rpsI]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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rpsI can be deleted, but null mutants grow slowly and express kanamycin resistance weakly (Bubunenko, 2007), which may explain why a deletion was not isolated by Baba (2006), leading to its misclassification as an essential gene.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rpsI

Gene Synonym(s)

ECK3219, b3230, JW3199[1], JW3199

Product Desc.

30S ribosomal subunit protein S9[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

30S ribosomal subunit protein S9[4]

Product Synonyms(s)

30S ribosomal subunit protein S9[1], B3230[2][1], RpsI[2][1] , ECK3219, JW3199, b3230

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rplM-rpsI[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


rpsI can be deleted, but null mutants grow slowly and express kanamycin resistance weakly (Bubunenko, 2007), which may explain why a deletion was not isolated by Baba (2006), leading to its misclassification as an essential gene.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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