secM:Quickview: Difference between revisions

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{|   id="G49b024df61828"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[secM:Gene|''secM]]'' (synonyms: ''ECK0098, b0097, JW5007, srrA, yacA, gene X'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''secM''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[secM:Gene_Product(s)|SecM product]]<ref name='LIB:Riley_2006'/>: regulator of secA translation product, B0097 product, SrrA product, YacA product, Gene X product
''ECK0098, b0097, JW5007, srrA, yacA, gene X''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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secretion monitor that regulates SecA translation (General Secretory Pathway)<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
secretion monitor that regulates SecA translation (General Secretory Pathway)<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Secretion monitor controlling secA expression<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''regulator of secA translation<ref name='LIB:Riley_2006'/>, B0097<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SrrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SecM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YacA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Gene X<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0098, JW5007, srrA, yacA, b0097''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:secMA-mutT|secMA-mutT]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:secMA-mutT|secMA-mutT]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=secM&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11087]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001075&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=secM&loc=MG1655%3A107705..108217,W3110%3A107705..108217,DH10B%3A81809..82321,BW2952%3A107704..108216]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=107704&end=108216&gene=secM&aa=mlwtagfndkicalntfeydrdgnnvsgiltrwrqfgkryfwphlllgmvaaslglpalsnaaepnapakattrnhepsakvnfgqlalleantrrpnsnysvdywhqhairtvirhlsfamapqtlpvaeeslplqaqhlalldtlsalltqegtpsekgyridyahftpqakfstpvwisqaqgiragpqrlt]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=secM+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=secM]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Translation and secretion of SecM regulates downstream secA gene expression. First 37 aa are predicted signal peptide. The arrest sequence is 150-FXXXXWIXXXXGIRAGP-166. The arrested peptide ends with G165: P-166 encodes an arrest requirement for free Pro166-tRNA in the ribosomal peptidyl transferase A site (Muto 2006).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

secM

Gene Synonym(s)

ECK0098, b0097, JW5007, srrA, yacA, gene X[1][2]

Product Desc.

secretion monitor that regulates SecA translation (General Secretory Pathway)[2][3]

Secretion monitor controlling secA expression[4]

Product Synonyms(s)

regulator of secA translation[1], B0097[2][1], SrrA[2][1], SecM[2][1], YacA[2][1], Gene X[2][1] , ECK0098, JW5007, srrA, yacA, b0097

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): secMA-mutT[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Translation and secretion of SecM regulates downstream secA gene expression. First 37 aa are predicted signal peptide. The arrest sequence is 150-FXXXXWIXXXXGIRAGP-166. The arrested peptide ends with G165: P-166 encodes an arrest requirement for free Pro166-tRNA in the ribosomal peptidyl transferase A site (Muto 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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