secY:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Move help links into the <above> tag inside templates.
touch
 
(12 intermediate revisions by 2 users not shown)
Line 17: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79.8336.P46a9a1742212d-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.8336.Y49b024e1a1f7e-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 24: Line 24:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="Y49b024e1a1f7e" class=" tableEdit New_Quickview_Table"


|-
|-
!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
||
||
[[secY:Gene|''secY]]'' (synonyms: ''ECK3287, b3300, JW3262, prlA'')<ref name='LIB:Riley_2006'/>
''secY''
|-
|-
!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
[[secY:Gene_Product(s)|SecY product]]<ref name='LIB:Riley_2006'/>: preprotein translocase membrane subunit product, B3300 product, PrlA product
''ECK3287, b3300, JW3262, prlA''<ref name='LIB:Riley_2006'/>, prlA''
|-
|-
!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
||
||
SecY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
SecY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:SecEGY-Secretion Complex|SecEGY-Secretion Complex]]<ref name='LIB:EcoCyc10.6'/>,[[:Category:Complex:Sec Protein Secretion Complex|Sec Protein Secretion Complex]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:SecEGY-Secretion Complex|SecEGY-Secretion Complex]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Sec Protein Secretion Complex|Sec Protein Secretion Complex]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


SecYE core translocon, protein export inner membrane pore protein<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''preprotein translocase membrane subunit<ref name='LIB:Riley_2006'/>, B3300<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SecY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PrlA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3287, JW3262, prlA, b3300''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
||


|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ|rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ]]<ref name='LIB:EcoCyc10.6'/>, rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ  
transcription unit(s): [[:Category:Txn_unit:rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ|rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ]]<ref name='LIB:EcoCyc10.6'/>, rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ  
Line 53: Line 62:
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=secY&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10766]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000757&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=secY&loc=MG1655%3A3442119..3440788,W3110%3A4196319..4197650,DH10B%3A3539864..3538533,REL606%3A3370671..3372002,BW2952%3A3327945..3329276]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3327945&end=3329276&gene=secY&aa=makqpgldfqsakgglgelkrrllfvigalivfrigsfipipgidaavlaklleqqrgtiiemfnmfsggalsrasifalgimpyisasiiiqlltvvhptlaeikkegesgrrkisqytrygtlvlaifqsigiatglpnmpgmqglvinpgfafyftavvslvtgtmflmwlgeqitergigngisiiifagivaglppaiahtieqarqgdlhflvlllvavlvfavtffvvfvergqrrivvnyakrqqgrrvyaaqsthlplkvnmagvipaifassiilfpatiaswfgggtgwnwlttislylqpgqplyvllyasaiiffcffytalvfnpretadnlkksgafvpgirpgeqtakyidkvmtrltlvgalyitficlipefmrdamkvpfyfggtsllivvvvimdfmaqvqtlmmssqyesalkkanlkgygr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=secY+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=secY]]&nbsp;&nbsp;


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.8336.P46a9a1742212d&page=8336&pagename={{FULLPAGENAMEE}}&type=1&template=Quickview_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.8336.Y49b024e1a1f7e&page=8336&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.8336.P46a9a1742212d-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.8336.Y49b024e1a1f7e--></protect>
{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
SecYEG complex interacts with SecDFyajC to form a hexameric holocomplex.  N-terminus is blocked.  Overexpression causes a decrease in the amount of biofilm formed and decreases motility.<ref name='LIB:EcoGene'/>




Latest revision as of 21:46, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

secY

Gene Synonym(s)

ECK3287, b3300, JW3262, prlA[1], prlA

Product Desc.

SecY[2][3];

Component of SecEGY-Secretion Complex[2][3]; Sec Protein Secretion Complex[2][3]

SecYE core translocon, protein export inner membrane pore protein[4]

Product Synonyms(s)

preprotein translocase membrane subunit[1], B3300[2][1], SecY[2][1], PrlA[2][1] , ECK3287, JW3262, prlA, b3300

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ[2], rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


SecYEG complex interacts with SecDFyajC to form a hexameric holocomplex. N-terminus is blocked. Overexpression causes a decrease in the amount of biofilm formed and decreases motility.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=secY:Quickview&oldid=1396012"