uxaA:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[uxaA:Gene|''uxaA]]'' (synonyms: ''ECK3082, b3091, JW3062, ygjW'')<ref name='LIB:Riley_2006'/>
''uxaA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[uxaA:Gene_Product(s)|UxaA product]]<ref name='LIB:Riley_2006'/>: altronate hydrolase product, B3091 product, YgjW product
''ECK3082, b3091, JW3062, ygjW''<ref name='LIB:Riley_2006'/>, ygjW''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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ALTRODEHYDRAT-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


D-Altronate hydrolase (hydratase), Fe(2)-requiring; galacturonate branch of hexuronate pathway<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''altronate hydrolase<ref name='LIB:Riley_2006'/>, B3091<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UxaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3082, JW3062, ygjW, b3091''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:uxaCA|uxaCA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:uxaCA|uxaCA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=uxaA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12734]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002375&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=uxaA&loc=MG1655%3A3241336..3239849,W3110%3A3241970..3240483,REL606%3A3176348..3174861,DH10B%3A3339081..3337594,BW2952%3A3126997..3128484]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3126997&end=3128484&gene=uxaA&aa=mqyikihaldnvavaladlaegtevsvdnqtvtlrqdvarghkfaltdiakganvikyglpigyaladiaagvhvhahntrtnlsdldqyryqpdfqdlpaqaadrevqiyrrangdvgvrnelwilptvgcvngiarqiqnrflketnnaegtdgvflfshtygcsqlgddhintrtmlqnmvrhpnagavlviglgcennqvaafretlgdidpervhfmicqqqddeieagiehlhqlynvmrndkrepgklselkfglecggsdglsgitanpmlgrfsdyvianggttvltevpemfgaeqllmdhcrdeatfeklvtmvndfkqyfiahdqpiyenpspgnkaggittledkslgctqkagssvvvdvlrygerlktpglnllsapgndavatsalagagchmvlfstgrgtpyggfvptvkiatnselaakkkhwidfdagqlihgkampqlleefidtivefangkqtcnerndfrelaifksgvtl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=uxaA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=uxaA]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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ExuR regulon.  UxaA is paralogous to GarD and contains a conserved CxxS redox motif. The unprocessed tisB pre-mRNA functions as an antisense RNA regulator of uxaA, resulting in cleavage of uxaA mRNA at the antisense site and also reciprocal cleavage and activation of the tisB pre-mRNA (forming the +42 tisB RNA) (Weel-Sneve, 2008).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

uxaA

Gene Synonym(s)

ECK3082, b3091, JW3062, ygjW[1], ygjW

Product Desc.

D-Altronate hydrolase (hydratase), Fe(2)-requiring; galacturonate branch of hexuronate pathway[2]

Product Synonyms(s)

altronate hydrolase[1], B3091[3][1], YgjW[3][1], UxaA[3][1] , ECK3082, JW3062, ygjW, b3091

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): uxaCA[3]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


ExuR regulon. UxaA is paralogous to GarD and contains a conserved CxxS redox motif. The unprocessed tisB pre-mRNA functions as an antisense RNA regulator of uxaA, resulting in cleavage of uxaA mRNA at the antisense site and also reciprocal cleavage and activation of the tisB pre-mRNA (forming the +42 tisB RNA) (Weel-Sneve, 2008).[2]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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