ygeR:Quickview: Difference between revisions

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{|   id="I49b030a4149c6"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ygeR:Gene|''ygeR]]'' (synonyms: ''ECK2861, b2865, JW2833'')<ref name='LIB:Riley_2006'/>
''ygeR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ygeR:Gene_Product(s)|YgeR product]]<ref name='LIB:Riley_2006'/>: Tetratricopeptide repeat transcriptional regulator product, B2865 product
''ECK2861, b2865, JW2833''<ref name='LIB:Riley_2006'/>, JW2833''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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putative lipoprotein<ref name='LIB:EcoCyc10.6'/> putative lipoprotein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>  
putative lipoprotein<ref name='LIB:EcoCyc10.6'/>; putative lipoprotein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>


Novel lipoprotein, function unknown, metalloprotease homolog; M23 family<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''Tetratricopeptide repeat transcriptional regulator<ref name='LIB:Riley_2006'/>, B2865<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgeR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2861, JW2833, b2865''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ygeR|ygeR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ygeR|ygeR]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ygeR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7484]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004047&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ygeR&loc=MG1655%3A2997913..2997158,W3110%3A2998547..2997792,DH10B%3A3091783..3091028,REL606%3A2885646..2884891,BW2952%3A2884306..2885061]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2884306&end=2885061&gene=ygeR&aa=mffkrgkilsagrlnkkslgivmllsvglllagcsgskssdtgtysgsvytvkrgdtlyrisrttgtsvkelarlngisppytievgqklklggaksssitrkstaksttktasvtpssavpksswppvgqrcwlwpttgkvimpystadggnkgidisaprgtpiyaagagkvvyvgnqlrgygnlimikhsedyitayahndtmlvnngqsvkagqkiatmgstdaasvrlhfqiryrataidplrylppqgskpkc]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygeR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygeR]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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nlpD, ygeR, yebA and envC are paralogs. ygeR is a backbone gene flanking the insertion of the type three secretion system pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving a 10 kb remnant. First 25 aa are a type II signal peptide.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ygeR

Gene Synonym(s)

ECK2861, b2865, JW2833[1], JW2833

Product Desc.

putative lipoprotein[2]; putative lipoprotein; predicted DNA-binding transcriptional regulator[3]

Novel lipoprotein, function unknown, metalloprotease homolog; M23 family[4]

Product Synonyms(s)

Tetratricopeptide repeat transcriptional regulator[1], B2865[2][1], YgeR[2][1] , ECK2861, JW2833, b2865

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygeR[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


nlpD, ygeR, yebA and envC are paralogs. ygeR is a backbone gene flanking the insertion of the type three secretion system pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving a 10 kb remnant. First 25 aa are a type II signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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