fbp:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Move help links into the <above> tag inside templates.
touch
 
(8 intermediate revisions by 2 users not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46ac1b0c48fd3"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 242: Line 242:
From ECOO157CYC  
From ECOO157CYC  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52437.U46ac1b0c48fd3&page=52437&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52437.U46ac1b0c48fd3&page=52437&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.52437.U46ac1b0c48fd3-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.52437.U46ac1b0c48fd3-->
Line 267: Line 267:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46ac1b3c364e4"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00316 PFAM:PF00316]
[http://pfam.janelia.org/family/PF00316 PF00316 Fructose-1-6-bisphosphatase]
|
|
   
   
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56655 SUPERFAMILY:56655]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG10283
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10283
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000277
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0279
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0013842
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52437.K46ac1b3c364e4&page=52437&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52437.K46ac1b3c364e4&page=52437&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.52437.K46ac1b3c364e4-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.52437.K46ac1b3c364e4-->
Line 296: Line 338:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46a854650eb16"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52437.J46a854650eb16&page=52437&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.52437.J46a854650eb16&page=52437&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.52437.J46a854650eb16-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.52437.J46a854650eb16-->
Line 308: Line 350:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:38, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016841 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022879 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G43670 (score: 1.000; bootstrap: 98%)
  • AT3G54050 (score: 0.105)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012835 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000026056 (score: 0.629)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026892 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001404 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001871 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040822-23 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040822-23 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1587 (score: 0.560)
  • ZDB-GENE-030131-7171 (score: 0.560)
  • ZDB-CDNA-040425-3092 (score: 0.541)
  • ZDB-GENE-021206-11 (score: 0.541)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216231 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032820 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16400-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020563 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000020562 (score: 0.647)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000253266 (score: 1.000; bootstrap: 100%)
  • ENSP00000253269 (score: 0.641)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029667 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000029668 (score: 0.342)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003412 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000003429 (score: 0.664)

From Inparanoid:20070104

Mus musculus

  • MGI:95491 (score: 1.000; bootstrap: 100%)
  • MGI:95492 (score: 0.613)

From Inparanoid:20070104

Oryza gramene

  • O64421 (score: 1.000; bootstrap: 99%)
  • Q5N9E2 (score: 1.000; bootstrap: 99%)
  • Q9SDL8 (score: 0.997)
  • Q43139 (score: 0.851)
  • Q75HX2 (score: 0.813)
  • Q94JN1 (score: 0.154)
  • P09195 (score: 0.119)
  • Q7G5R1 (score: 0.109)
  • O64422 (score: 0.109)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000036128 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023865 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000023685 (score: 0.339)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR377C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC11984c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000139771 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000168356 (score: 0.515)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025164001 (score: 1.000; bootstrap: 100%)
  • GSTENP00029094001 (score: 0.719)
  • GSTENP00029093001 (score: 0.552)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038177 (score: 1.000; bootstrap: 71%)
  • ENSXETP00000038182 (score: 0.435)
  • ENSXETP00000005220 (score: 0.415)
  • ENSXETP00000005238 (score: 0.373)

From Inparanoid:20070104

Shigella flexneri

FBP

From SHIGELLACYC

E. coli O157

FBP

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00316 Fructose-1-6-bisphosphatase

Superfamily (EcoliWiki Page)

SUPERFAMILY:56655

EcoCyc

EcoCyc:EG10283

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10283

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000277

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0279

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013842

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=fbp:Evolution&oldid=1392121"