proP:Evolution: Difference between revisions

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<noinclude>{{TabsTop}}
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{{Tab|Quickview|proP}}{{Tab|Gene|proP}}{{Tab|Gene Product(s)|proP}}{{Tab|Expression|proP}}{{Tab On|Evolution|proP}}{{Tab|On One Page|proP}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46ac165611423"  class=" tableEdit Evolution_homologs_table" 
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|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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PROP
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From ECOO157CYC
 
|- class="tableEdit_footer"
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418535&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418535&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46ac165c9c25c"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103661 SUPERFAMILY:103661]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00083 PF00083  Sugar (and other) transporter]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00083 PFAM:PF00083]
[http://pfam.janelia.org/family/PF08946 PF08946  Osmosensory transporter coiled coil]
|
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[[EcoCyc]]
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EcoCyc:EG11612
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11612
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001560
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1569
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013462
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Caenorhabditis briggsae

  • WBGene00039162 (score: 1.000; bootstrap: 100%)
  • WBGene00027098 (score: 0.160)
  • WBGene00024393 (score: 0.149)
  • WBGene00027474 (score: 0.140)
  • WBGene00025704 (score: 0.139)
  • WBGene00024395 (score: 0.135)
  • WBGene00032394 (score: 0.133)
  • WBGene00024452 (score: 0.120)
  • WBGene00042042 (score: 0.119)
  • WBGene00030924 (score: 0.116)
  • WBGene00039573 (score: 0.116)
  • WBGene00026048 (score: 0.110)
  • WBGene00024396 (score: 0.109)
  • WBGene00027974 (score: 0.109)
  • WBGene00027345 (score: 0.105)
  • WBGene00032396 (score: 0.104)
  • WBGene00029653 (score: 0.104)
  • WBGene00032547 (score: 0.097)
  • WBGene00031157 (score: 0.081)
  • WBGene00041186 (score: 0.080)
  • WBGene00038285 (score: 0.076)
  • WBGene00039083 (score: 0.074)
  • WBGene00037407 (score: 0.072)
  • WBGene00041731 (score: 0.070)
  • WBGene00033157 (score: 0.066)
  • WBGene00024723 (score: 0.064)
  • WBGene00039084 (score: 0.056)
  • WBGene00024312 (score: 0.053)
  • WBGene00039082 (score: 0.052)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020906 (score: 1.000; bootstrap: 55%)
  • WBGene00010646 (score: 0.188)
  • WBGene00008677 (score: 0.154)
  • WBGene00007669 (score: 0.149)
  • WBGene00012443 (score: 0.136)
  • WBGene00018268 (score: 0.123)
  • WBGene00012085 (score: 0.121)
  • WBGene00020584 (score: 0.121)
  • WBGene00016003 (score: 0.120)
  • WBGene00019187 (score: 0.115)
  • WBGene00010931 (score: 0.108)
  • WBGene00011185 (score: 0.106)
  • WBGene00008647 (score: 0.090)
  • WBGene00007566 (score: 0.084)
  • WBGene00021028 (score: 0.081)
  • WBGene00019655 (score: 0.077)
  • WBGene00020698 (score: 0.076)
  • WBGene00020700 (score: 0.068)
  • WBGene00020157 (score: 0.067)
  • WBGene00020697 (score: 0.059)
  • WBGene00007947 (score: 0.057)
  • WBGene00013088 (score: 0.051)
  • WBGene00021158 (score: 0.050)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000342335 (score: 1.000; bootstrap: 100%)
  • ENSP00000321735 (score: 0.532)
  • ENSP00000261187 (score: 0.411)
  • ENSP00000285753 (score: 0.376)
  • ENSP00000330141 (score: 0.305)
  • ENSP00000310490 (score: 0.227)
  • ENSP00000343022 (score: 0.227)
  • ENSP00000309751 (score: 0.212)
  • ENSP00000319991 (score: 0.191)
  • ENSP00000307169 (score: 0.153)
  • ENSP00000315439 (score: 0.149)
  • ENSP00000276033 (score: 0.145)
  • ENSP00000355327 (score: 0.090)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013232 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000008120 (score: 0.375)
  • ENSMMUP00000019399 (score: 0.324)
  • ENSMMUP00000004803 (score: 0.303)
  • ENSMMUP00000003630 (score: 0.280)
  • ENSMMUP00000027882 (score: 0.212)
  • ENSMMUP00000023079 (score: 0.198)
  • ENSMMUP00000027884 (score: 0.151)
  • ENSMMUP00000019690 (score: 0.129)
  • ENSMMUP00000014523 (score: 0.129)
  • ENSMMUP00000028359 (score: 0.113)
  • ENSMMUP00000014111 (score: 0.093)
  • ENSMMUP00000017292 (score: 0.084)

From Inparanoid:20070104

Mus musculus

  • MGI:1933438 (score: 1.000; bootstrap: 100%)
  • MGI:1929519 (score: 0.537)
  • MGI:1330284 (score: 0.392)
  • MGI:106013 (score: 0.372)
  • MGI:2443515 (score: 0.292)
  • MGI:2144585 (score: 0.248)
  • MGI:2147716 (score: 0.235)
  • MGI:1916559 (score: 0.189)
  • MGI:2385183 (score: 0.154)
  • MGI:1203732 (score: 0.140)
  • MGI:2663709 (score: 0.117)
  • MGI:1919722 (score: 0.082)

From Inparanoid:20070104

Shigella flexneri

PROP

From SHIGELLACYC

E. coli O157

PROP

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Superfamily (EcoliWiki Page)

SUPERFAMILY:103661

Pfam (EcoliWiki Page)

PF00083 Sugar (and other) transporter

Pfam (EcoliWiki Page)

PF08946 Osmosensory transporter coiled coil

EcoCyc

EcoCyc:EG11612

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11612

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001560

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1569

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013462

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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