aslA:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00884 PFAM:PF00884]
[http://pfam.janelia.org/family/PF00884 PF00884 Sulfatase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53649 SUPERFAMILY:53649]
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[[EcoCyc]]
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EcoCyc:EG10089
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10089
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000085
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0087
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012411
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:37, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000029647 (score: 1.000; bootstrap: 93%)
  • ENSANGP00000018435 (score: 0.283)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021721 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000005667 (score: 0.388)
  • ENSAPMP00000030595 (score: 0.257)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000006001 (score: 1.000; bootstrap: 87%)
  • ENSBTAP00000021364 (score: 0.141)
  • ENSBTAP00000014073 (score: 0.136)
  • ENSBTAP00000004773 (score: 0.120)
  • ENSBTAP00000019877 (score: 0.062)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036662 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000029422 (score: 1.000; bootstrap: 74%)
  • ENSCAFP00000016615 (score: 0.131)
  • ENSCAFP00000016405 (score: 0.123)
  • ENSCAFP00000000803 (score: 0.119)
  • ENSCAFP00000016319 (score: 0.115)
  • ENSCAFP00000016437 (score: 0.102)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002986 (score: 1.000; bootstrap: 77%)
  • ENSCINP00000001919 (score: 0.080)
  • ENSCINP00000006879 (score: 0.057)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050320-118 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050320-118 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0033763 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21235-PA (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010135 (score: 1.000; bootstrap: 79%)
  • ENSGALP00000015844 (score: 0.154)
  • ENSGALP00000029641 (score: 0.125)
  • ENSGALP00000026779 (score: 0.118)
  • ENSGALP00000026807 (score: 0.109)
  • ENSGALP00000006654 (score: 0.061)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000217961 (score: 1.000; bootstrap: 70%)
  • ENSP00000216124 (score: 1.000; bootstrap: 73%)
  • ENSP00000044768 (score: 0.402)
  • ENSP00000350900 (score: 0.384)
  • ENSP00000352319 (score: 0.381)
  • ENSP00000268695 (score: 0.124)
  • ENSP00000347310 (score: 0.122)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021382 (score: 1.000; bootstrap: 74%)
  • ENSMMUP00000022876 (score: 0.128)
  • ENSMMUP00000006609 (score: 0.099)
  • ENSMMUP00000016319 (score: 0.093)
  • ENSMMUP00000009574 (score: 0.082)
  • ENSMMUP00000000592 (score: 0.076)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007525 (score: 1.000; bootstrap: 81%)
  • ENSMODP00000005427 (score: 0.129)
  • ENSMODP00000021837 (score: 0.122)
  • ENSMODP00000000051 (score: 0.104)
  • ENSMODP00000000046 (score: 0.095)
  • ENSMODP00000000036 (score: 0.062)

From Inparanoid:20070104

Mus musculus

  • MGI:1355303 (score: 1.000; bootstrap: 97%)
  • MGI:88077 (score: 0.105)
  • MGI:1921258 (score: 0.093)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000014435 (score: 1.000; bootstrap: 61%)
  • ENSPTRP00000016267 (score: 0.099)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000017782 (score: 1.000; bootstrap: 71%)
  • ENSRNOP00000005257 (score: 1.000; bootstrap: 72%)
  • ENSRNOP00000042484 (score: 0.134)
  • ENSRNOP00000019528 (score: 0.116)
  • ENSRNOP00000035783 (score: 0.098)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBPB10D82c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000144940 (score: 1.000; bootstrap: 90%)
  • NEWSINFRUP00000133718 (score: 0.094)
  • NEWSINFRUP00000166470 (score: 0.056)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00033317001 (score: 1.000; bootstrap: 91%)
  • GSTENP00030497001 (score: 0.083)
  • GSTENP00017886001 (score: 0.081)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000034248 (score: 1.000; bootstrap: 79%)
  • ENSXETP00000030741 (score: 0.754)
  • ENSXETP00000024579 (score: 0.118)
  • ENSXETP00000010930 (score: 0.087)
  • ENSXETP00000017914 (score: 0.065)
  • ENSXETP00000013665 (score: 0.064)

From Inparanoid:20070104

E. coli O157

ASLA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00884 Sulfatase

Superfamily (EcoliWiki Page)

SUPERFAMILY:53649

EcoCyc

EcoCyc:EG10089

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10089

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000085

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0087

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012411

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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