gpsA:Evolution: Difference between revisions

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<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|gpsA}}{{Tab|Gene|gpsA}}{{Tab|Gene Product(s)|gpsA}}{{Tab|Expression|gpsA}}{{Tab On|Evolution|gpsA}}{{Tab|On One Page|gpsA}}{{TabsBottom}}
{{Tab|Quickview|gpsA}}{{Tab|Gene|gpsA}}{{Tab|Gene Product(s)|gpsA}}{{Tab|Expression|gpsA}}{{Tab On|Evolution|gpsA}}{{Tab|On One Page|gpsA}}{{TabsBottom}}
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</noinclude>
==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46ac05a7bb2dc"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
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''Anopheles gambiae''   
''Anopheles gambiae''   
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|
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
|-class='sortbottom'
|-
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..A46a08f494c655&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
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''E. coli'' O157
|
GPSA
|
From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.G46ac05a7bb2dc&page=51181&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418065&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418065&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46ac05d420e7b"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF01210 PF01210  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus]
|
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01210 PFAM:PF01210]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48179 SUPERFAMILY:48179]
|
|
   
   
|-class='sortbottom'
|-  
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..E46a08f5a6d14e&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
|
|-
|
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11728:SF0 PTHR11728:SF0]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF07479 PF07479  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG20091
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG20091
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120002442
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB4142
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0011795
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.S46ac05d420e7b&page=51181&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
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{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46a84402de6f2"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.F46a84402de6f2&page=51181&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000002204 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017679 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G40690 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000021683 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000023610 (score: 0.684)
  • ENSBTAP00000012955 (score: 0.321)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038184 (score: 1.000; bootstrap: 100%)
  • WBGene00031452 (score: 0.436)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009824 (score: 1.000; bootstrap: 100%)
  • WBGene00010778 (score: 0.444)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012187 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008053 (score: 0.576)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014267 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2576 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3523 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1262 (score: 0.721)
  • ZDB-CDNA-040425-1263 (score: 0.721)
  • ZDB-GENE-030131-3906 (score: 0.721)
  • ZDB-CDNA-050417-210 (score: 0.693)
  • ZDB-GENE-050417-209 (score: 0.693)
  • ZDB-CDNA-041010-220 (score: 0.676)
  • ZDB-GENE-041010-220 (score: 0.676)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001128 (score: 1.000; bootstrap: 100%)
  • FBgn0034825 (score: 0.480)
  • FBgn0051169 (score: 0.377)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16715-PA (score: 1.000; bootstrap: 100%)
  • GA16060-PA (score: 0.273)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019678 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000018695 (score: 0.745)
  • ENSGALP00000028211 (score: 0.381)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000301149 (score: 1.000; bootstrap: 100%)
  • ENSP00000282541 (score: 0.698)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008603 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000025883 (score: 0.703)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022926 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018971 (score: 0.111)

From Inparanoid:20070104

Mus musculus

  • MGI:95679 (score: 1.000; bootstrap: 100%)
  • MGI:1289257 (score: 0.699)
  • MGI:1919502 (score: 0.607)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008412 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000025382 (score: 0.293)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026200 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000036106 (score: 0.715)
  • ENSRNOP00000033802 (score: 0.610)
  • ENSRNOP00000006506 (score: 0.494)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOL059W (score: 1.000; bootstrap: 100%)
  • YDL022W (score: 0.614)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2155 (score: 1.000; bootstrap: 100%)
  • SPAC23D34c (score: 0.514)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134996 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000173703 (score: 0.786)
  • NEWSINFRUP00000154494 (score: 0.649)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020090001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023665001 (score: 0.674)
  • GSTENP00033849001 (score: 0.486)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000039939 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Shigella flexneri

GPSA

From SHIGELLACYC

E. coli O157

GPSA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR11728:SF0

Pfam (EcoliWiki Page)

PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

EcoCyc

EcoCyc:EG20091

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002442

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4142

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011795

Escherichia coli str. K-12 substr. MG1655

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