gpsA:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Edited by wikibot
touch
 
(12 intermediate revisions by 2 users not shown)
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='213102'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46ac05a7bb2dc"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 39: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Apis mellifera''   
''Apis mellifera''   
Line 46: Line 46:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 53: Line 53:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 62: Line 62:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
Line 70: Line 70:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
Line 78: Line 78:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 86: Line 86:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 93: Line 93:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Danio rerio''   
''Danio rerio''   
Line 108: Line 108:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila melanogaster''   
''Drosophila melanogaster''   
Line 117: Line 117:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
Line 125: Line 125:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 134: Line 134:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 142: Line 142:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Macaca mulatta''   
''Macaca mulatta''   
Line 150: Line 150:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 158: Line 158:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Mus musculus''   
''Mus musculus''   
Line 167: Line 167:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Pan troglodytes''   
''Pan troglodytes''   
Line 175: Line 175:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Rattus norvegicus''   
''Rattus norvegicus''   
Line 185: Line 185:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
Line 193: Line 193:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 201: Line 201:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 210: Line 210:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 219: Line 219:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Xenopus tropicalis''   
''Xenopus tropicalis''   
Line 226: Line 226:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 233: Line 233:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 240: Line 240:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
 
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.G46ac05a7bb2dc&page=51181&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.G46ac05a7bb2dc&page=51181&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51181.G46ac05a7bb2dc-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51181.G46ac05a7bb2dc-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 261: Line 262:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='213103'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46ac05d420e7b"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF01210 PF01210  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48179 SUPERFAMILY:48179]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
|
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01210 PFAM:PF01210]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11728:SF0 PTHR11728:SF0]
|
|
   
   
|-class='sortbottom'
|-
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.S46ac05d420e7b&page=51181&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF07479 PF07479  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG20091
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG20091
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120002442
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB4142
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0011795
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.S46ac05d420e7b&page=51181&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51181.S46ac05d420e7b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51181.S46ac05d420e7b-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 289: Line 354:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='115189'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46a84402de6f2"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
|-class='sortbottom'
 
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.F46a84402de6f2&page=51181&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51181.F46a84402de6f2&page=51181&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51181.F46a84402de6f2-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51181.F46a84402de6f2-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000002204 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017679 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G40690 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000021683 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000023610 (score: 0.684)
  • ENSBTAP00000012955 (score: 0.321)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038184 (score: 1.000; bootstrap: 100%)
  • WBGene00031452 (score: 0.436)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009824 (score: 1.000; bootstrap: 100%)
  • WBGene00010778 (score: 0.444)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012187 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008053 (score: 0.576)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014267 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2576 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3523 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1262 (score: 0.721)
  • ZDB-CDNA-040425-1263 (score: 0.721)
  • ZDB-GENE-030131-3906 (score: 0.721)
  • ZDB-CDNA-050417-210 (score: 0.693)
  • ZDB-GENE-050417-209 (score: 0.693)
  • ZDB-CDNA-041010-220 (score: 0.676)
  • ZDB-GENE-041010-220 (score: 0.676)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001128 (score: 1.000; bootstrap: 100%)
  • FBgn0034825 (score: 0.480)
  • FBgn0051169 (score: 0.377)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16715-PA (score: 1.000; bootstrap: 100%)
  • GA16060-PA (score: 0.273)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019678 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000018695 (score: 0.745)
  • ENSGALP00000028211 (score: 0.381)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000301149 (score: 1.000; bootstrap: 100%)
  • ENSP00000282541 (score: 0.698)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008603 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000025883 (score: 0.703)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022926 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018971 (score: 0.111)

From Inparanoid:20070104

Mus musculus

  • MGI:95679 (score: 1.000; bootstrap: 100%)
  • MGI:1289257 (score: 0.699)
  • MGI:1919502 (score: 0.607)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008412 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000025382 (score: 0.293)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026200 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000036106 (score: 0.715)
  • ENSRNOP00000033802 (score: 0.610)
  • ENSRNOP00000006506 (score: 0.494)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOL059W (score: 1.000; bootstrap: 100%)
  • YDL022W (score: 0.614)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2155 (score: 1.000; bootstrap: 100%)
  • SPAC23D34c (score: 0.514)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134996 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000173703 (score: 0.786)
  • NEWSINFRUP00000154494 (score: 0.649)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020090001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023665001 (score: 0.674)
  • GSTENP00033849001 (score: 0.486)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000039939 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Shigella flexneri

GPSA

From SHIGELLACYC

E. coli O157

GPSA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR11728:SF0

Pfam (EcoliWiki Page)

PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

EcoCyc

EcoCyc:EG20091

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002442

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4142

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011795

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=gpsA:Evolution&oldid=1391624"