glgB:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02806 PF02806  Alpha amylase, C-terminal all-beta domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02922 PF02922  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00128 PF00128  Alpha amylase, catalytic domain]
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[[EcoCyc]]
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EcoCyc:EG10378
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10378
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000371
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0373
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011209
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:36, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010197 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G36390 (score: 1.000; bootstrap: 100%)
  • AT5G03650 (score: 0.688)
  • AT3G20440 (score: 0.174)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012431 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037508 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00011409 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000011608 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005626 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000001394 (score: 0.461)
  • ENSCINP00000012372 (score: 0.461)
  • ENSCINP00000011864 (score: 0.452)
  • ENSCINP00000011821 (score: 0.446)
  • ENSCINP00000016043 (score: 0.099)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0214943 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0053138 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17312-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000024956 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000264326 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000020880 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021064 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1921435 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q40733 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000026100 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YEL011W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000151029 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00035214001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000008729 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GLGB

From SHIGELLACYC

E. coli O157

GLGB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02806 Alpha amylase, C-terminal all-beta domain

Pfam (EcoliWiki Page)

PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)

Pfam (EcoliWiki Page)

PF00128 Alpha amylase, catalytic domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51011

Superfamily (EcoliWiki Page)

SUPERFAMILY:51445

Panther (EcoliWiki Page)

PTHR10357:SF13

Superfamily (EcoliWiki Page)

SUPERFAMILY:81296

Superfamily (EcoliWiki Page)

SUPERFAMILY:81296

EcoCyc

EcoCyc:EG10378

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10378

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000371

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0373

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011209

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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