degQ:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46abf8bfcc20c"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Canis familiaris''   
''Canis familiaris''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''E. coli'' O157  
''E. coli'' O157  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417701&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417701&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00089 PF00089  Trypsin]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50156 SUPERFAMILY:50156]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50156 SUPERFAMILY:50156]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50494 SUPERFAMILY:50494]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22939:SF10 PTHR22939:SF10]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
|-
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00089 PFAM:PF00089]
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00595 PF00595  PDZ domain (Also known as DHR or GLGF)]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00595 PF00595  PDZ domain (Also known as DHR or GLGF)]
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|-
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[[EcoCyc]]
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EcoCyc:G7682
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12612
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004229
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2496
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0010609
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012547 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014738 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G27925 (score: 1.000; bootstrap: 63%)
  • AT5G39830 (score: 0.181)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000026026 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000011042 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000004564 (score: 0.425)
  • ENSBTAP00000026804 (score: 0.313)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000018471 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000021445 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008772 (score: 0.562)
  • ENSCAFP00000012325 (score: 0.385)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040704-64 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040704-64 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040801-245 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040801-260 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038233 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21097-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025070 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000025068 (score: 0.468)
  • ENSGALP00000021805 (score: 0.218)
  • ENSGALP00000021600 (score: 0.070)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000303766 (score: 1.000; bootstrap: 100%)
  • ENSP00000299020 (score: 0.469)
  • ENSP00000305919 (score: 0.354)
  • ENSP00000258080 (score: 0.242)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000011963 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000029846 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000007924 (score: 0.437)
  • ENSMMUP00000002846 (score: 0.365)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003793 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000010233 (score: 0.456)
  • ENSMODP00000013256 (score: 0.338)
  • ENSMODP00000005932 (score: 0.220)

From Inparanoid:20070104

Mus musculus

  • MGI:3036260 (score: 1.000; bootstrap: 100%)
  • MGI:1929076 (score: 0.433)
  • MGI:1925808 (score: 0.355)
  • MGI:1928676 (score: 0.210)

From Inparanoid:20070104

Oryza gramene

  • Q6AUN5 (score: 1.000; bootstrap: 99%)
  • Q7XUW0 (score: 0.180)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005327 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000020762 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000034549 (score: 0.395)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022166 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000027860 (score: 0.437)
  • ENSRNOP00000010852 (score: 0.341)
  • ENSRNOP00000030076 (score: 0.215)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL123W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC23G32c (score: 1.000; bootstrap: 100%)
  • SPBC16855 (score: 0.229)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000136976 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000160494 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000180577 (score: 0.579)
  • NEWSINFRUP00000170339 (score: 0.153)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022346001 (score: 1.000; bootstrap: 100%)
  • GSTENP00031557001 (score: 1.000; bootstrap: 100%)
  • GSTENP00006681001 (score: 0.425)
  • GSTENP00032214001 (score: 0.198)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000033992 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000033189 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000043887 (score: 0.435)

From Inparanoid:20070104

E. coli O157

DEGQ

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00089 Trypsin

Superfamily (EcoliWiki Page)

SUPERFAMILY:50156

Superfamily (EcoliWiki Page)

SUPERFAMILY:50156

Superfamily (EcoliWiki Page)

SUPERFAMILY:50494

Panther (EcoliWiki Page)

PTHR22939:SF10

Pfam (EcoliWiki Page)

PF00595 PDZ domain (Also known as DHR or GLGF)

Pfam (EcoliWiki Page)

PF00595 PDZ domain (Also known as DHR or GLGF)

EcoCyc

EcoCyc:G7682

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12612

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004229

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2496

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010609

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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