garR:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03446 PF03446  NAD binding domain of 6-phosphogluconate dehydrogenase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48179 SUPERFAMILY:48179]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF03446 PFAM:PF03446]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22981:SF31 PTHR22981:SF31]
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[[EcoCyc]]
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EcoCyc:EG11176
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11176
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001158
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1163
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010273
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
<references/>
<references />
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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000005689 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G29120 (score: 1.000; bootstrap: 81%)
  • AT1G71180 (score: 0.220)
  • AT1G71170 (score: 0.207)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000001374 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028013 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007122 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000029344 (score: 1.000; bootstrap: 77%)
  • ENSCAFP00000004423 (score: 0.947)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012462 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040801-264 (score: 1.000; bootstrap: 88%)
  • ZDB-CDNA-040801-283 (score: 1.000; bootstrap: 87%)
  • ZDB-CDNA-040425-2516 (score: 0.777)
  • ZDB-GENE-040426-1582 (score: 0.777)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216217 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0034390 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018063 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265395 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030452 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000404 (score: 1.000; bootstrap: 71%)

From Inparanoid:20070104

Mus musculus

  • MGI:1889802 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Oryza gramene

  • Q656T5 (score: 1.000; bootstrap: 95%)
  • Q84VC8 (score: 0.316)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000013200 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000011069 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000159095 (score: 1.000; bootstrap: 88%)
  • NEWSINFRUP00000178935 (score: 0.391)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00034120001 (score: 1.000; bootstrap: 94%)
  • GSTENP00017474001 (score: 0.580)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000032406 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

YHAE

From SHIGELLACYC

E. coli O157

YHAE

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR22981:SF31

EcoCyc

EcoCyc:EG11176

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11176

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001158

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1163

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010273

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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