parE:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02518 PFAM:PF02518]
[http://pfam.janelia.org/family/PF02518 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00204 PF00204  DNA gyrase B]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00986 PF00986  DNA gyrase B subunit, carboxyl terminus]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10169:SF20 PTHR10169:SF20]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54211 SUPERFAMILY:54211]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55874 SUPERFAMILY:55874]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56719 SUPERFAMILY:56719]
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[[EcoCyc]]
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EcoCyc:EG10687
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10687
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000680
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0681
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009950
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000022005 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000027483 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000006030 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000025651 (score: 0.113)
  • YP_026241 (score: 0.278)

From Inparanoid:20070104

Caenorhabditis briggsae

  • YP_026241 (score: 1.000; bootstrap: 94%)
  • WBGene00037627 (score: 1.000; bootstrap: 100%)
  • WBGene00025743 (score: 0.309)

From Inparanoid:20070104

Caenorhabditis elegans

  • YP_026241 (score: 1.000; bootstrap: 93%)
  • WBGene00010785 (score: 1.000; bootstrap: 100%)
  • WBGene00022854 (score: 0.429)
  • WBGene00009309 (score: 0.315)
  • WBGene00021604 (score: 0.282)
  • WBGene00019876 (score: 0.221)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023713 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008554 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017040 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • YP_026241 (score: 1.000; bootstrap: 85%)
  • ZDB-GENE-030131-2453 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041212-101 (score: 0.985)

From Inparanoid:20070104

Dictyostelium discoideum

  • YP_026241 (score: 1.000; bootstrap: 97%)
  • DDB0214907 (score: 1.000; bootstrap: 100%)
  • DDB0231510 (score: 0.313)

From Inparanoid:20070104

Drosophila melanogaster

  • YP_026241 (score: 1.000; bootstrap: 100%)
  • FBgn0003732 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • YP_026241 (score: 1.000; bootstrap: 100%)
  • GA10169-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006239 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000018410 (score: 0.641)
  • YP_026241 (score: 0.270)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000264331 (score: 1.000; bootstrap: 100%)
  • ENSP00000269577 (score: 0.607)
  • YP_026241 (score: 0.269)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000009678 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000018703 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000016461 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:98791 (score: 1.000; bootstrap: 100%)
  • MGI:98790 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000025354 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000015554 (score: 0.516)
  • YP_026241 (score: 0.270)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000040257 (score: 1.000; bootstrap: 100%)
  • YP_026241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YP_026241 (score: 0.260)
  • YNL088W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • YP_026241 (score: 0.260)
  • SPBC1A43c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000139068 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000180720 (score: 0.658)
  • YP_026241 (score: 0.269)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024101001 (score: 1.000; bootstrap: 100%)
  • GSTENP00033707001 (score: 0.593)
  • YP_026241 (score: 0.279)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000048725 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Shigella flexneri

PARE

From SHIGELLACYC

E. coli O157

PARE

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Pfam (EcoliWiki Page)

PF00204 DNA gyrase B

Pfam (EcoliWiki Page)

PF00986 DNA gyrase B subunit, carboxyl terminus

Panther (EcoliWiki Page)

PTHR10169:SF20

Superfamily (EcoliWiki Page)

SUPERFAMILY:54211

Superfamily (EcoliWiki Page)

SUPERFAMILY:55874

Superfamily (EcoliWiki Page)

SUPERFAMILY:56719

EcoCyc

EcoCyc:EG10687

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10687

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000680

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0681

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009950

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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