yqeF:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00108 PFAM:PF00108]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53901 SUPERFAMILY:53901]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18919:SF22 PTHR18919:SF22]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00108 PF00108  Thiolase, N-terminal domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53901 SUPERFAMILY:53901]
[http://pfam.janelia.org/family/PF02803 PF02803  Thiolase, C-terminal domain]
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[[EcoCyc]]
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EcoCyc:G7464
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13097
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004027
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2900
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009335
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020372 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025799 (score: 1.000; bootstrap: 48%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G47720 (score: 1.000; bootstrap: 95%)
  • AT5G48230 (score: 0.666)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003660 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000012548 (score: 0.634)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042428 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009952 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001037 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019425 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-990714-22 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-5 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-051120-30 (score: 0.158)
  • ZDB-GENE-051120-66 (score: 0.158)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231621 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035203 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21576-PA (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019037 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000239584 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016873 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008873 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Mus musculus

  • MGI:87871 (score: 1.000; bootstrap: 99%)
  • MGI:109182 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6K3Z3 (score: 1.000; bootstrap: 93%)
  • Q9ASK5 (score: 0.679)
  • Q9XHH0 (score: 0.111)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000032016 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018934 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000048489 (score: 0.628)
  • ENSRNOP00000041632 (score: 0.422)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL028W (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2159c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000180335 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023110001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000023800 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

YQEF

From SHIGELLACYC

E. coli O157

YQEF

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:53901

Superfamily (EcoliWiki Page)

SUPERFAMILY:53901

Panther (EcoliWiki Page)

PTHR18919:SF22

Pfam (EcoliWiki Page)

PF00108 Thiolase, N-terminal domain

Pfam (EcoliWiki Page)

PF02803 Thiolase, C-terminal domain

EcoCyc

EcoCyc:G7464

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13097

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004027

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2900

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009335

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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