lysA:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02784 PFAM:PF02784]
[http://pfam.janelia.org/family/PF00278 PF00278  Pyridoxal-dependent decarboxylase, C-terminal sheet domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02784 PF02784  Pyridoxal-dependent decarboxylase, pyridoxal binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50621 SUPERFAMILY:50621]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51419 SUPERFAMILY:51419]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11482:SF35 PTHR11482:SF35]
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[[EcoCyc]]
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EcoCyc:EG10549
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10549
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000542
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0544
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009309
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000008816 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000009019 (score: 0.426)
  • ENSANGP00000020224 (score: 0.423)
  • ENSANGP00000008815 (score: 0.317)
  • ENSANGP00000020301 (score: 0.171)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G14390 (score: 1.000; bootstrap: 100%)
  • AT5G11880 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038323 (score: 1.000; bootstrap: 100%)
  • WBGene00033029 (score: 0.106)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003844 (score: 1.000; bootstrap: 100%)
  • WBGene00018764 (score: 0.107)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000007432 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000008768 (score: 0.181)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190621 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0013307 (score: 1.000; bootstrap: 100%)
  • FBgn0013308 (score: 0.727)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021660 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018485 (score: 0.511)
  • ENSMODP00000007263 (score: 0.358)

From Inparanoid:20070104

Mus musculus

  • MGI:1859169 (score: 1.000; bootstrap: 100%)
  • MGI:97402 (score: 0.437)
  • MGI:2442093 (score: 0.363)

From Inparanoid:20070104

Oryza gramene

  • Q6ZG77 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000031505 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000007259 (score: 0.421)
  • ENSRNOP00000007999 (score: 0.316)
  • ENSRNOP00000045880 (score: 0.194)
  • ENSRNOP00000049464 (score: 0.169)
  • ENSRNOP00000039827 (score: 0.131)
  • ENSRNOP00000043900 (score: 0.124)
  • ENSRNOP00000037115 (score: 0.083)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKL184W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC1444c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156319 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000137759 (score: 0.389)
  • NEWSINFRUP00000147907 (score: 0.277)
  • NEWSINFRUP00000147578 (score: 0.219)
  • NEWSINFRUP00000168901 (score: 0.177)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000020790 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Shigella flexneri

LYSA

From SHIGELLACYC

E. coli O157

LYSA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain

Pfam (EcoliWiki Page)

PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:50621

Superfamily (EcoliWiki Page)

SUPERFAMILY:51419

Panther (EcoliWiki Page)

PTHR11482:SF35

EcoCyc

EcoCyc:EG10549

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10549

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000542

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0544

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009309

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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