barA:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01627 PF01627  Hpt domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00512 PF00512  His Kinase A (phosphoacceptor) domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02518 PF02518  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00672 PF00672  HAMP domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00072 PF00072  Response regulator receiver domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF09984 PF09984  Uncharacterized signal transduction histidine kinase domain (DUF2222)]
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[[EcoCyc]]
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EcoCyc:EG11367
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11367
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001335
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1341
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009131
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000017693 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G27320 (score: 1.000; bootstrap: 100%)
  • AT2G01830 (score: 1.000; bootstrap: 100%)
  • AT5G35750 (score: 0.431)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215385 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q75WE8 (score: 1.000; bootstrap: 99%)
  • Q76GZ9 (score: 1.000; bootstrap: 99%)
  • Q8S6P5 (score: 0.548)
  • Q5JJP1 (score: 0.325)
  • Q852H8 (score: 0.325)
  • Q76H00 (score: 0.318)
  • Q9FRY7 (score: 0.313)
  • Q6Z5P3 (score: 0.312)
  • Q9AUQ0 (score: 0.232)
  • Q84TZ8 (score: 0.088)
  • Q84TZ9 (score: 0.082)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC27E29 (score: 1.000; bootstrap: 100%)
  • SPCC746 (score: 0.094)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000000181 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

BARA

From SHIGELLACYC

E. coli O157

BARA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01627 Hpt domain

Pfam (EcoliWiki Page)

PF00512 His Kinase A (phosphoacceptor) domain

Pfam (EcoliWiki Page)

PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Pfam (EcoliWiki Page)

PF00672 HAMP domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47226

Superfamily (EcoliWiki Page)

SUPERFAMILY:47384

Superfamily (EcoliWiki Page)

SUPERFAMILY:52172

Panther (EcoliWiki Page)

PTHR24423:SF158

Superfamily (EcoliWiki Page)

SUPERFAMILY:55874

Pfam (EcoliWiki Page)

PF00072 Response regulator receiver domain

Pfam (EcoliWiki Page)

PF09984 Uncharacterized signal transduction histidine kinase domain (DUF2222)

EcoCyc

EcoCyc:EG11367

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11367

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001335

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1341

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009131

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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