sseA:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52821 SUPERFAMILY:52821]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52821 SUPERFAMILY:52821]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00581 PF00581  Rhodanese-like domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00581 PF00581  Rhodanese-like domain]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00581 PFAM:PF00581]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00581 PFAM:PF00581]
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[[EcoCyc]]
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EcoCyc:EG11600
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11600
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001548
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1557
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0008299
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:34, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019167 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G79230 (score: 1.000; bootstrap: 100%)
  • AT1G16460 (score: 0.596)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000006951 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000006944 (score: 0.460)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038927 (score: 1.000; bootstrap: 100%)
  • WBGene00027189 (score: 0.090)
  • WBGene00041645 (score: 0.063)
  • WBGene00041643 (score: 0.063)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010383 (score: 1.000; bootstrap: 75%)
  • WBGene00010380 (score: 0.626)
  • WBGene00022007 (score: 0.283)
  • WBGene00022006 (score: 0.283)
  • WBGene00008409 (score: 0.103)
  • WBGene00017387 (score: 0.066)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000002183 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000002185 (score: 0.419)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-9020 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0184083 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000021737 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000020373 (score: 0.995)
  • ENSGALP00000029948 (score: 0.411)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000342333 (score: 1.000; bootstrap: 100%)
  • ENSP00000249042 (score: 0.413)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016216 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000016214 (score: 0.437)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000858 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000000864 (score: 0.405)

From Inparanoid:20070104

Mus musculus

  • MGI:2179733 (score: 1.000; bootstrap: 100%)
  • MGI:98852 (score: 0.423)

From Inparanoid:20070104

Oryza gramene

  • Q6H4W2 (score: 1.000; bootstrap: 100%)
  • Q94C43 (score: 0.706)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000039973 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000024666 (score: 0.433)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000000201 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000000202 (score: 0.427)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR251C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC4B31 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145126 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000163536 (score: 0.340)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00034832001 (score: 1.000; bootstrap: 99%)
  • GSTENP00012223001 (score: 0.180)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000035007 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000023627 (score: 0.360)
  • ENSXETP00000035013 (score: 0.345)

From Inparanoid:20070104

E. coli O157

SSEA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52821

Superfamily (EcoliWiki Page)

SUPERFAMILY:52821

Pfam (EcoliWiki Page)

PF00581 Rhodanese-like domain

Pfam (EcoliWiki Page)

PF00581 Rhodanese-like domain

PFAM (EcoliWiki Page)

PFAM:PF00581

EcoCyc

EcoCyc:EG11600

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11600

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001548

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1557

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008299

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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