yfbS:Evolution: Difference between revisions

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From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02080 PFAM:PF02080]
[http://pfam.janelia.org/family/PF03600 PF03600  Citrate transporter]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10283:SF12 PTHR10283:SF12]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=116726 SUPERFAMILY:116726]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=116726 SUPERFAMILY:116726]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02080 PF02080  TrkA-C domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02080 PF02080  TrkA-C domain]
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[[EcoCyc]]
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EcoCyc:G7186
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG14103
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003761
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3856
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007565
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:34, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G47560 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031317 (score: 1.000; bootstrap: 100%)
  • WBGene00029597 (score: 0.347)
  • WBGene00037575 (score: 0.227)
  • WBGene00029030 (score: 0.174)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003519 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20251-PA (score: 1.000; bootstrap: 100%)
  • GA17201-PA (score: 0.146)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007061 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000005772 (score: 0.343)
  • ENSGALP00000009629 (score: 0.339)
  • ENSGALP00000021021 (score: 0.276)
  • ENSGALP00000014400 (score: 0.270)

From Inparanoid:20070104

Mus musculus

  • MGI:2442367 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6ZFH7 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000038185 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000020043 (score: 0.446)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC3B84c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134070 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000183045 (score: 0.364)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000023252 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000049224 (score: 0.545)
  • ENSXETP00000017909 (score: 0.473)
  • ENSXETP00000042738 (score: 0.438)
  • ENSXETP00000051278 (score: 0.424)

From Inparanoid:20070104

Shigella flexneri

YFBS

From SHIGELLACYC

E. coli O157

YFBS

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03600 Citrate transporter

Panther (EcoliWiki Page)

PTHR10283:SF12

Superfamily (EcoliWiki Page)

SUPERFAMILY:116726

Superfamily (EcoliWiki Page)

SUPERFAMILY:116726

Pfam (EcoliWiki Page)

PF02080 TrkA-C domain

Pfam (EcoliWiki Page)

PF02080 TrkA-C domain

EcoCyc

EcoCyc:G7186

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14103

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003761

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3856

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007565

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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