yohF:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416641&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416641&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00106 PF00106  short chain dehydrogenase]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00106 PFAM:PF00106]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[[EcoCyc]]
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EcoCyc:EG12019
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12019
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001936
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1955
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007062
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000000813 (score: 1.000; bootstrap: 63%)
  • ENSBTAP00000011525 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00035307 (score: 1.000; bootstrap: 74%)
  • WBGene00035308 (score: 1.000; bootstrap: 53%)
  • WBGene00028617 (score: 0.174)
  • WBGene00028618 (score: 0.163)
  • WBGene00033128 (score: 0.153)
  • WBGene00033127 (score: 0.150)
  • WBGene00028619 (score: 0.142)
  • WBGene00033126 (score: 0.130)
  • WBGene00031245 (score: 0.116)
  • WBGene00041131 (score: 0.108)
  • WBGene00028621 (score: 0.100)
  • WBGene00028504 (score: 0.097)
  • WBGene00033125 (score: 0.097)
  • WBGene00039097 (score: 0.097)
  • WBGene00041130 (score: 0.095)
  • WBGene00028648 (score: 0.092)
  • WBGene00040923 (score: 0.089)
  • WBGene00031232 (score: 0.087)
  • WBGene00042377 (score: 0.087)
  • WBGene00033122 (score: 0.082)
  • WBGene00031193 (score: 0.079)
  • WBGene00040924 (score: 0.071)
  • WBGene00033120 (score: 0.071)
  • WBGene00033123 (score: 0.068)
  • WBGene00028201 (score: 0.062)
  • WBGene00028200 (score: 0.054)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00021646 (score: 1.000; bootstrap: 65%)
  • WBGene00021647 (score: 0.794)
  • WBGene00000977 (score: 0.158)
  • WBGene00019886 (score: 0.152)
  • WBGene00000978 (score: 0.136)
  • WBGene00008375 (score: 0.120)
  • WBGene00007245 (score: 0.112)
  • WBGene00009110 (score: 0.110)
  • WBGene00020151 (score: 0.107)
  • WBGene00015532 (score: 0.104)
  • WBGene00019885 (score: 0.099)
  • WBGene00000986 (score: 0.099)
  • WBGene00014093 (score: 0.094)
  • WBGene00008516 (score: 0.094)
  • WBGene00009153 (score: 0.091)
  • WBGene00017408 (score: 0.088)
  • WBGene00020154 (score: 0.080)
  • WBGene00009236 (score: 0.078)
  • WBGene00021003 (score: 0.053)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000008886 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-7002 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003966 (score: 1.000; bootstrap: 61%)
  • ENSMODP00000003989 (score: 0.608)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129614 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

E. coli O157

YOHF

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00106 short chain dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

EcoCyc

EcoCyc:EG12019

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12019

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001936

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1955

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007062

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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