udk:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46abd11153621"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10285:SF6 PTHR10285:SF6]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00485 PFAM:PF00485]
[http://pfam.janelia.org/family/PF00485 PF00485 Phosphoribulokinase / Uridine kinase family]
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[[EcoCyc]]
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EcoCyc:EG11701
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11701
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001644
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1652
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006840
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
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Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000028090 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000032846 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G27190 (score: 1.000; bootstrap: 99%)
  • AT5G40870 (score: 0.882)
  • AT1G55810 (score: 0.674)
  • AT4G26510 (score: 0.624)
  • AT3G27440 (score: 0.614)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020981 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000015623 (score: 0.078)
  • ENSBTAP00000014316 (score: 0.059)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026196 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008948 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019858 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000029480 (score: 0.500)
  • ENSCAFP00000019316 (score: 0.215)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000007458 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000014825 (score: 0.061)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-7158 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1585 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1004 (score: 0.743)
  • ZDB-GENE-030131-5265 (score: 0.743)
  • ZDB-CDNA-040912-115 (score: 0.556)
  • ZDB-GENE-040912-113 (score: 0.556)
  • ZDB-GENE-040724-238 (score: 0.171)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230208 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0022029 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19542-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000009713 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000005542 (score: 0.060)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000271395 (score: 1.000; bootstrap: 100%)
  • ENSP00000253015 (score: 0.560)
  • ENSP00000346155 (score: 0.202)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000000760 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013056 (score: 0.493)
  • ENSMMUP00000020403 (score: 0.202)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021258 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000001634 (score: 0.065)

From Inparanoid:20070104

Mus musculus

  • MGI:1931744 (score: 1.000; bootstrap: 100%)
  • MGI:98904 (score: 0.568)
  • MGI:1915806 (score: 0.205)

From Inparanoid:20070104

Oryza gramene

  • Q53LT4 (score: 1.000; bootstrap: 99%)
  • Q6K7V0 (score: 1.000; bootstrap: 99%)
  • Q6ZIA3 (score: 0.619)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000002709 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000036774 (score: 0.560)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015792 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000005213 (score: 0.446)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNR012W (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC1621c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000135528 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000128558 (score: 0.556)
  • NEWSINFRUP00000128310 (score: 0.183)
  • NEWSINFRUP00000168407 (score: 0.123)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00013361001 (score: 1.000; bootstrap: 99%)
  • GSTENP00014402001 (score: 0.546)
  • GSTENP00023499001 (score: 0.120)
  • GSTENP00009786001 (score: 0.090)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000037794 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000003108 (score: 0.470)

From Inparanoid:20070104

Shigella flexneri

UDK

From SHIGELLACYC

E. coli O157

UDK

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR10285:SF6

Pfam (EcoliWiki Page)

PF00485 Phosphoribulokinase / Uridine kinase family

EcoCyc

EcoCyc:EG11701

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11701

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001644

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1652

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006840

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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