otsB:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10788:SF6 PTHR10788:SF6]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56784 SUPERFAMILY:56784]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02358 PFAM:PF02358]
[http://pfam.janelia.org/family/PF02358 PF02358 Trehalose-phosphatase]
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[[EcoCyc]]
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EcoCyc:EG11752
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11752
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001690
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1702
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006320
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
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Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G78090 (score: 1.000; bootstrap: 100%)
  • AT1G35910 (score: 0.550)
  • AT1G22210 (score: 0.539)
  • AT5G65140 (score: 0.532)
  • AT5G10100 (score: 0.478)
  • AT4G39770 (score: 0.477)
  • AT2G22190 (score: 0.465)
  • AT5G51460 (score: 0.404)
  • AT4G12430 (score: 0.402)
  • AT4G22590 (score: 0.402)

From Inparanoid:20070104

Oryza gramene

  • Q6ZAL2 (score: 1.000; bootstrap: 100%)
  • Q6H5L4 (score: 0.677)
  • Q6ZGP8 (score: 0.565)
  • Q67VY4 (score: 0.486)
  • Q7XI41 (score: 0.451)
  • Q75WV3 (score: 0.448)
  • Q6AVE7 (score: 0.438)
  • Q9FWQ2 (score: 0.411)
  • Q7XT34 (score: 0.377)
  • Q9XFD7 (score: 0.117)

From Inparanoid:20070104

Shigella flexneri

OTSB

From SHIGELLACYC

E. coli O157

OTSB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR10788:SF6

Superfamily (EcoliWiki Page)

SUPERFAMILY:56784

Pfam (EcoliWiki Page)

PF02358 Trehalose-phosphatase

EcoCyc

EcoCyc:EG11752

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11752

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001690

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1702

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006320

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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