ruvB:Evolution: Difference between revisions

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From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF05496 PFAM:PF05496]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=46785 SUPERFAMILY:46785]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13779:SF2 PTHR13779:SF2]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05491 PF05491  Holliday junction DNA helicase ruvB C-terminus]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05496 PF05496  Holliday junction DNA helicase ruvB N-terminus]
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[[EcoCyc]]
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EcoCyc:RUVB
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10924
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004476
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0917
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006204
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G53230 (score: 1.000; bootstrap: 100%)
  • AT5G03340 (score: 0.921)
  • AT3G09840 (score: 0.907)
  • AT3G01610 (score: 0.255)
  • AT2G03670 (score: 0.231)
  • AT3G56690 (score: 0.217)
  • AT1G03000 (score: 0.145)
  • AT5G08470 (score: 0.135)
  • AT4G29040 (score: 0.099)
  • AT2G20140 (score: 0.099)
  • AT5G19990 (score: 0.098)
  • AT5G20000 (score: 0.097)
  • AT1G45000 (score: 0.097)
  • AT5G58290 (score: 0.097)
  • AT5G43010 (score: 0.096)
  • AT3G05530 (score: 0.093)
  • AT1G09100 (score: 0.090)
  • AT1G80350 (score: 0.090)
  • AT2G34560 (score: 0.081)
  • AT3G19740 (score: 0.075)
  • AT4G04910 (score: 0.073)
  • AT2G45500 (score: 0.071)
  • AT4G27680 (score: 0.070)
  • AT3G27120 (score: 0.070)
  • AT5G53540 (score: 0.070)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0040078 (score: 1.000; bootstrap: 100%)
  • FBgn0040075 (score: 0.383)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17841-PA (score: 1.000; bootstrap: 100%)
  • GA22008-PA (score: 0.383)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000274008 (score: 1.000; bootstrap: 100%)
  • ENSP00000351777 (score: 0.307)
  • ENSP00000342961 (score: 0.235)
  • ENSP00000305494 (score: 0.232)
  • ENSP00000303511 (score: 0.131)
  • ENSP00000248633 (score: 0.129)
  • ENSP00000157812 (score: 0.102)
  • ENSP00000261303 (score: 0.101)
  • ENSP00000216407 (score: 0.091)
  • ENSP00000325770 (score: 0.089)
  • ENSP00000298852 (score: 0.089)
  • ENSP00000225282 (score: 0.069)
  • ENSP00000245121 (score: 0.065)
  • ENSP00000238497 (score: 0.062)
  • ENSP00000260709 (score: 0.062)
  • ENSP00000254950 (score: 0.062)

From Inparanoid:20070104

Oryza gramene

  • Q5VRN1 (score: 1.000; bootstrap: 100%)
  • Q7XE16 (score: 0.268)
  • Q6Z562 (score: 0.261)
  • Q7XU79 (score: 0.145)
  • Q7XTN8 (score: 0.128)
  • Q6AUP8 (score: 0.128)
  • Q6ZJ20 (score: 0.111)
  • Q9FEB6 (score: 0.082)
  • Q9FNU8 (score: 0.079)
  • Q8W3N9 (score: 0.070)
  • Q9FXT8 (score: 0.068)
  • Q8W421 (score: 0.068)
  • Q8W3N8 (score: 0.067)
  • Q84NR0 (score: 0.066)
  • Q8S118 (score: 0.066)
  • Q5QLG1 (score: 0.066)
  • Q5NAF6 (score: 0.066)
  • Q8W422 (score: 0.065)
  • Q7XW77 (score: 0.061)
  • Q6YUV9 (score: 0.058)
  • Q65X08 (score: 0.058)
  • Q8W3P0 (score: 0.057)
  • Q658G8 (score: 0.056)
  • Q5QMP6 (score: 0.053)
  • Q7XXR9 (score: 0.051)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023584 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000040121 (score: 0.284)
  • ENSRNOP00000004927 (score: 0.232)
  • ENSRNOP00000000183 (score: 0.227)
  • ENSRNOP00000022582 (score: 0.130)
  • ENSRNOP00000011855 (score: 0.105)
  • ENSRNOP00000025819 (score: 0.102)
  • ENSRNOP00000005329 (score: 0.101)
  • ENSRNOP00000009649 (score: 0.091)
  • ENSRNOP00000033763 (score: 0.078)
  • ENSRNOP00000006361 (score: 0.070)
  • ENSRNOP00000046690 (score: 0.063)
  • ENSRNOP00000003715 (score: 0.062)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLL034C (score: 1.000; bootstrap: 100%)
  • YDL126C (score: 0.231)
  • YLR397C (score: 0.213)
  • YNL329C (score: 0.103)
  • YGR270W (score: 0.090)
  • YDR394W (score: 0.081)
  • YGR028W (score: 0.066)
  • YPR173C (score: 0.066)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC15658 (score: 1.000; bootstrap: 100%)
  • SPBC56F27c (score: 0.286)
  • SPBC16E90c (score: 0.252)
  • SPAC17A51 (score: 0.155)
  • SPCC5533 (score: 0.113)
  • SPBP22H75c (score: 0.105)
  • SPBC23G72c (score: 0.101)
  • SPBC47c (score: 0.091)
  • SPAC3A112c (score: 0.091)
  • SPCC5760c (score: 0.086)
  • SPAC2G116 (score: 0.082)
  • SPCC24B100c (score: 0.058)

From Inparanoid:20070104

Shigella flexneri

RUVB

From SHIGELLACYC

E. coli O157

RUVB

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:46785

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR13779:SF2

Pfam (EcoliWiki Page)

PF05491 Holliday junction DNA helicase ruvB C-terminus

Pfam (EcoliWiki Page)

PF05496 Holliday junction DNA helicase ruvB N-terminus

EcoCyc

EcoCyc:RUVB

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10924

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004476

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0917

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006204

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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