ruvB:Evolution: Difference between revisions

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{{Tab|Quickview|ruvB}}{{Tab|Gene|ruvB}}{{Tab|Gene Product(s)|ruvB}}{{Tab|Expression|ruvB}}{{Tab On|Evolution|ruvB}}{{Tab|On One Page|ruvB}}{{TabsBottom}}
{{Tab|Quickview|ruvB}}{{Tab|Gene|ruvB}}{{Tab|Gene Product(s)|ruvB}}{{Tab|Expression|ruvB}}{{Tab On|Evolution|ruvB}}{{Tab|On One Page|ruvB}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46abcc6956f5a"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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RUVB
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From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.47707.R46abcc6956f5a&page=47707&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416374&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416374&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46abcc73e747f"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=46785 SUPERFAMILY:46785]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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|-
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13779:SF2 PTHR13779:SF2]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF05491 PF05491  Holliday junction DNA helicase ruvB C-terminus]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF05496 PFAM:PF05496]
[http://pfam.janelia.org/family/PF05496 PF05496 Holliday junction DNA helicase ruvB N-terminus]
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[[EcoCyc]]
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EcoCyc:RUVB
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10924
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004476
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0917
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0006204
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G53230 (score: 1.000; bootstrap: 100%)
  • AT5G03340 (score: 0.921)
  • AT3G09840 (score: 0.907)
  • AT3G01610 (score: 0.255)
  • AT2G03670 (score: 0.231)
  • AT3G56690 (score: 0.217)
  • AT1G03000 (score: 0.145)
  • AT5G08470 (score: 0.135)
  • AT4G29040 (score: 0.099)
  • AT2G20140 (score: 0.099)
  • AT5G19990 (score: 0.098)
  • AT5G20000 (score: 0.097)
  • AT1G45000 (score: 0.097)
  • AT5G58290 (score: 0.097)
  • AT5G43010 (score: 0.096)
  • AT3G05530 (score: 0.093)
  • AT1G09100 (score: 0.090)
  • AT1G80350 (score: 0.090)
  • AT2G34560 (score: 0.081)
  • AT3G19740 (score: 0.075)
  • AT4G04910 (score: 0.073)
  • AT2G45500 (score: 0.071)
  • AT4G27680 (score: 0.070)
  • AT3G27120 (score: 0.070)
  • AT5G53540 (score: 0.070)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0040078 (score: 1.000; bootstrap: 100%)
  • FBgn0040075 (score: 0.383)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17841-PA (score: 1.000; bootstrap: 100%)
  • GA22008-PA (score: 0.383)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000274008 (score: 1.000; bootstrap: 100%)
  • ENSP00000351777 (score: 0.307)
  • ENSP00000342961 (score: 0.235)
  • ENSP00000305494 (score: 0.232)
  • ENSP00000303511 (score: 0.131)
  • ENSP00000248633 (score: 0.129)
  • ENSP00000157812 (score: 0.102)
  • ENSP00000261303 (score: 0.101)
  • ENSP00000216407 (score: 0.091)
  • ENSP00000325770 (score: 0.089)
  • ENSP00000298852 (score: 0.089)
  • ENSP00000225282 (score: 0.069)
  • ENSP00000245121 (score: 0.065)
  • ENSP00000238497 (score: 0.062)
  • ENSP00000260709 (score: 0.062)
  • ENSP00000254950 (score: 0.062)

From Inparanoid:20070104

Oryza gramene

  • Q5VRN1 (score: 1.000; bootstrap: 100%)
  • Q7XE16 (score: 0.268)
  • Q6Z562 (score: 0.261)
  • Q7XU79 (score: 0.145)
  • Q7XTN8 (score: 0.128)
  • Q6AUP8 (score: 0.128)
  • Q6ZJ20 (score: 0.111)
  • Q9FEB6 (score: 0.082)
  • Q9FNU8 (score: 0.079)
  • Q8W3N9 (score: 0.070)
  • Q9FXT8 (score: 0.068)
  • Q8W421 (score: 0.068)
  • Q8W3N8 (score: 0.067)
  • Q84NR0 (score: 0.066)
  • Q8S118 (score: 0.066)
  • Q5QLG1 (score: 0.066)
  • Q5NAF6 (score: 0.066)
  • Q8W422 (score: 0.065)
  • Q7XW77 (score: 0.061)
  • Q6YUV9 (score: 0.058)
  • Q65X08 (score: 0.058)
  • Q8W3P0 (score: 0.057)
  • Q658G8 (score: 0.056)
  • Q5QMP6 (score: 0.053)
  • Q7XXR9 (score: 0.051)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023584 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000040121 (score: 0.284)
  • ENSRNOP00000004927 (score: 0.232)
  • ENSRNOP00000000183 (score: 0.227)
  • ENSRNOP00000022582 (score: 0.130)
  • ENSRNOP00000011855 (score: 0.105)
  • ENSRNOP00000025819 (score: 0.102)
  • ENSRNOP00000005329 (score: 0.101)
  • ENSRNOP00000009649 (score: 0.091)
  • ENSRNOP00000033763 (score: 0.078)
  • ENSRNOP00000006361 (score: 0.070)
  • ENSRNOP00000046690 (score: 0.063)
  • ENSRNOP00000003715 (score: 0.062)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLL034C (score: 1.000; bootstrap: 100%)
  • YDL126C (score: 0.231)
  • YLR397C (score: 0.213)
  • YNL329C (score: 0.103)
  • YGR270W (score: 0.090)
  • YDR394W (score: 0.081)
  • YGR028W (score: 0.066)
  • YPR173C (score: 0.066)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC15658 (score: 1.000; bootstrap: 100%)
  • SPBC56F27c (score: 0.286)
  • SPBC16E90c (score: 0.252)
  • SPAC17A51 (score: 0.155)
  • SPCC5533 (score: 0.113)
  • SPBP22H75c (score: 0.105)
  • SPBC23G72c (score: 0.101)
  • SPBC47c (score: 0.091)
  • SPAC3A112c (score: 0.091)
  • SPCC5760c (score: 0.086)
  • SPAC2G116 (score: 0.082)
  • SPCC24B100c (score: 0.058)

From Inparanoid:20070104

Shigella flexneri

RUVB

From SHIGELLACYC

E. coli O157

RUVB

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:46785

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR13779:SF2

Pfam (EcoliWiki Page)

PF05491 Holliday junction DNA helicase ruvB C-terminus

Pfam (EcoliWiki Page)

PF05496 Holliday junction DNA helicase ruvB N-terminus

EcoCyc

EcoCyc:RUVB

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10924

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004476

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0917

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006204

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


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