sodB:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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{|   id="L46abc56d235f5"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46abc56d235f5"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=46609 SUPERFAMILY:46609]
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00081 PFAM:PF00081]
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11404:SF8 PTHR11404:SF8]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=46609 SUPERFAMILY:46609]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54719 SUPERFAMILY:54719]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00081 PF00081  Iron/manganese superoxide dismutases, alpha-hairpin domain]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11404:SF8 PTHR11404:SF8]
[http://pfam.janelia.org/family/PF02777 PF02777  Iron/manganese superoxide dismutases, C-terminal domain]
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[[EcoCyc]]
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EcoCyc:EG10954
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10954
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000943
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0947
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005537
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
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Latest revision as of 08:32, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000022865 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G51100 (score: 1.000; bootstrap: 96%)
  • AT4G25100 (score: 0.240)
  • AT5G23310 (score: 0.125)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008569 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007739 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5FB28 (score: 1.000; bootstrap: 99%)
  • Q5VSB7 (score: 0.734)
  • Q9ZWM8 (score: 0.726)
  • Q4VQ67 (score: 0.340)
  • Q5W1C2 (score: 0.258)
  • Q52WX4 (score: 0.247)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000028824 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

SODB

From SHIGELLACYC

E. coli O157

SODB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:46609

Panther (EcoliWiki Page)

PTHR11404:SF8

Superfamily (EcoliWiki Page)

SUPERFAMILY:54719

Pfam (EcoliWiki Page)

PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain

Pfam (EcoliWiki Page)

PF02777 Iron/manganese superoxide dismutases, C-terminal domain

EcoCyc

EcoCyc:EG10954

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10954

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000943

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0947

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005537

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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