curA:Evolution: Difference between revisions

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{{Tab|Quickview|curA}}{{Tab|Gene|curA}}{{Tab|Gene Product(s)|curA}}{{Tab|Expression|curA}}{{Tab On|Evolution|curA}}{{Tab|On One Page|curA}}{{TabsBottom}}
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{|class = 'sortable' {{Prettytable}} id='209376'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46abbf49e4310"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00107 PF00107  Zinc-binding dehydrogenase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50129 SUPERFAMILY:50129]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00107 PFAM:PF00107]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11695:SF313 PTHR11695:SF313]
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[[EcoCyc]]
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EcoCyc:G6760
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13772
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003349
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3534
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0004834
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:32, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020750 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000012490 (score: 0.372)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000006907 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G16990 (score: 1.000; bootstrap: 99%)
  • AT5G16970 (score: 0.874)
  • AT5G17000 (score: 0.872)
  • AT3G03080 (score: 0.729)
  • AT1G26320 (score: 0.712)
  • AT5G37940 (score: 0.667)
  • AT5G37980 (score: 0.665)
  • AT5G16960 (score: 0.660)
  • AT5G38000 (score: 0.643)
  • AT3G59845 (score: 0.498)
  • AT5G16980 (score: 0.432)
  • AT1G65560 (score: 0.348)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000014649 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025949 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010911 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000004469 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004207 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041212-80 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041212-89 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231606 (score: 1.000; bootstrap: 100%)
  • DDB0186921 (score: 0.350)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000031994 (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000311572 (score: 1.000; bootstrap: 53%)
  • ENSP00000339034 (score: 0.605)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016746 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000015080 (score: 0.544)
  • ENSMMUP00000025928 (score: 0.405)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000005764 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914353 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Oryza gramene

  • Q53LC7 (score: 1.000; bootstrap: 99%)
  • Q7XUK3 (score: 0.422)
  • Q8S0M7 (score: 0.344)
  • Q69XJ5 (score: 0.128)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011071 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000020335 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YML131W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAPB24D38c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000128105 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025902001 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000032291 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Shigella flexneri

YNCB

From SHIGELLACYC

E. coli O157

YNCB

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00107 Zinc-binding dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:50129

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR11695:SF313

EcoCyc

EcoCyc:G6760

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13772

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003349

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3534

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004834

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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