curA:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00107 PF00107  Zinc-binding dehydrogenase]
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[[EcoCyc]]
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EcoCyc:G6760
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13772
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003349
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3534
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0004834
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:32, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020750 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000012490 (score: 0.372)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000006907 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G16990 (score: 1.000; bootstrap: 99%)
  • AT5G16970 (score: 0.874)
  • AT5G17000 (score: 0.872)
  • AT3G03080 (score: 0.729)
  • AT1G26320 (score: 0.712)
  • AT5G37940 (score: 0.667)
  • AT5G37980 (score: 0.665)
  • AT5G16960 (score: 0.660)
  • AT5G38000 (score: 0.643)
  • AT3G59845 (score: 0.498)
  • AT5G16980 (score: 0.432)
  • AT1G65560 (score: 0.348)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000014649 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025949 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010911 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000004469 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004207 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041212-80 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041212-89 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231606 (score: 1.000; bootstrap: 100%)
  • DDB0186921 (score: 0.350)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000031994 (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000311572 (score: 1.000; bootstrap: 53%)
  • ENSP00000339034 (score: 0.605)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016746 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000015080 (score: 0.544)
  • ENSMMUP00000025928 (score: 0.405)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000005764 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914353 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Oryza gramene

  • Q53LC7 (score: 1.000; bootstrap: 99%)
  • Q7XUK3 (score: 0.422)
  • Q8S0M7 (score: 0.344)
  • Q69XJ5 (score: 0.128)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011071 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000020335 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YML131W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAPB24D38c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000128105 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025902001 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000032291 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Shigella flexneri

YNCB

From SHIGELLACYC

E. coli O157

YNCB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00107 Zinc-binding dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:50129

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR11695:SF313

EcoCyc

EcoCyc:G6760

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13772

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003349

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3534

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004834

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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