abgA:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01546 PFAM:PF01546]
[http://pfam.janelia.org/family/PF01546 PF01546 Peptidase family M20/M25/M40]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53187 SUPERFAMILY:53187]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55031 SUPERFAMILY:55031]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07687 PF07687  Peptidase dimerisation domain]
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[[EcoCyc]]
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EcoCyc:G6670
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13352
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003265
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3135
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0004493
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G56650 (score: 1.000; bootstrap: 100%)
  • AT5G56660 (score: 0.854)
  • AT1G51760 (score: 0.515)
  • AT1G51780 (score: 0.499)
  • AT1G44350 (score: 0.357)
  • AT3G02875 (score: 0.335)
  • AT5G54140 (score: 0.294)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204719 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5N8F2 (score: 1.000; bootstrap: 100%)
  • Q8S9S4 (score: 0.504)
  • Q84XG9 (score: 0.503)
  • Q66VR4 (score: 0.487)
  • Q5Z678 (score: 0.417)
  • Q8H3C9 (score: 0.402)
  • Q8H3C8 (score: 0.372)
  • Q851L5 (score: 0.361)
  • Q8H3C7 (score: 0.354)
  • Q851L6 (score: 0.352)
  • Q7XUA8 (score: 0.331)

From Inparanoid:20070104

E. coli O157

YDAJ

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01546 Peptidase family M20/M25/M40

Superfamily (EcoliWiki Page)

SUPERFAMILY:53187

Superfamily (EcoliWiki Page)

SUPERFAMILY:55031

Pfam (EcoliWiki Page)

PF07687 Peptidase dimerisation domain

EcoCyc

EcoCyc:G6670

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13352

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003265

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3135

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004493

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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