puuC:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415816&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415816&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00171 PF00171  Aldehyde dehydrogenase family]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11699:SF46 PTHR11699:SF46]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00171 PFAM:PF00171]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53720 SUPERFAMILY:53720]
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[[EcoCyc]]
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EcoCyc:EG10036
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10036
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000033
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0035
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0004376
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000011659 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041442 (score: 1.000; bootstrap: 99%)
  • WBGene00028333 (score: 0.067)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000107 (score: 1.000; bootstrap: 98%)
  • WBGene00000108 (score: 0.718)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003484 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000012800 (score: 0.578)
  • ENSCAFP00000024319 (score: 0.458)
  • ENSCAFP00000002617 (score: 0.416)
  • ENSCAFP00000015693 (score: 0.381)
  • ENSCAFP00000002821 (score: 0.094)
  • ENSCAFP00000005653 (score: 0.082)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007511 (score: 1.000; bootstrap: 99%)
  • ENSGALP00000006780 (score: 0.474)
  • ENSGALP00000033209 (score: 0.438)
  • ENSGALP00000024396 (score: 0.306)
  • ENSGALP00000020685 (score: 0.063)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000259658 (score: 1.000; bootstrap: 98%)
  • ENSP00000261733 (score: 0.580)
  • ENSP00000249750 (score: 0.483)
  • ENSP00000297785 (score: 0.431)
  • ENSP00000332256 (score: 0.414)
  • ENSP00000273450 (score: 0.110)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000017155 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000025626 (score: 0.471)
  • ENSMMUP00000017493 (score: 0.435)
  • ENSMMUP00000008761 (score: 0.403)
  • ENSMMUP00000010932 (score: 0.143)
  • ENSMMUP00000016399 (score: 0.066)

From Inparanoid:20070104

Mus musculus

  • MGI:1919785 (score: 1.000; bootstrap: 99%)
  • MGI:99600 (score: 0.582)
  • MGI:107928 (score: 0.472)
  • MGI:1347050 (score: 0.436)
  • MGI:1353450 (score: 0.434)
  • MGI:1861722 (score: 0.421)
  • MGI:2444680 (score: 0.113)
  • MGI:1340024 (score: 0.106)

From Inparanoid:20070104

Oryza gramene

  • Q69XE0 (score: 1.000; bootstrap: 97%)
  • Q9LRE9 (score: 0.497)
  • Q94JC6 (score: 0.491)
  • Q8S529 (score: 0.489)
  • Q8S532 (score: 0.468)
  • Q8S531 (score: 0.462)
  • Q8S530 (score: 0.431)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035841 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000009274 (score: 0.348)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015282 (score: 1.000; bootstrap: 96%)
  • ENSRNOP00000001816 (score: 0.549)
  • ENSRNOP00000021757 (score: 0.472)
  • ENSRNOP00000024000 (score: 0.451)
  • ENSRNOP00000045261 (score: 0.330)
  • ENSRNOP00000024093 (score: 0.129)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YER073W (score: 1.000; bootstrap: 100%)
  • YMR169C (score: 0.055)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000155714 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000142953 (score: 0.415)
  • NEWSINFRUP00000165882 (score: 0.316)
  • NEWSINFRUP00000146331 (score: 0.120)
  • NEWSINFRUP00000163952 (score: 0.072)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000032265 (score: 1.000; bootstrap: 97%)
  • ENSXETP00000023778 (score: 0.461)
  • ENSXETP00000042449 (score: 0.443)
  • ENSXETP00000040642 (score: 0.433)
  • ENSXETP00000045235 (score: 0.390)
  • ENSXETP00000003988 (score: 0.095)

From Inparanoid:20070104

Shigella flexneri

ALDH

From SHIGELLACYC

E. coli O157

ALDH

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00171 Aldehyde dehydrogenase family

Panther (EcoliWiki Page)

PTHR11699:SF46

Superfamily (EcoliWiki Page)

SUPERFAMILY:53720

EcoCyc

EcoCyc:EG10036

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10036

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000033

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0035

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004376

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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