icd:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46abb83d5a0be"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00180 PF00180  Isocitrate/isopropylmalate dehydrogenase]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11835:SF18 PTHR11835:SF18]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00180 PFAM:PF00180]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53659 SUPERFAMILY:53659]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00180 PFAM:PF00180]
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[[EcoCyc]]
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EcoCyc:EG10489
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10489
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000482
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0484
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0003823
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010852 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000010336 (score: 0.188)
  • ENSANGP00000013512 (score: 0.184)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000009539 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G03290 (score: 1.000; bootstrap: 100%)
  • AT3G09810 (score: 0.853)
  • AT4G35260 (score: 0.298)
  • AT4G35650 (score: 0.276)
  • AT2G17130 (score: 0.272)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008177 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000025044 (score: 0.197)
  • ENSBTAP00000030212 (score: 0.139)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00033447 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009664 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020880 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000009923 (score: 0.189)
  • ENSCAFP00000028461 (score: 0.182)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014956 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000015369 (score: 0.215)
  • ENSCINP00000009119 (score: 0.176)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1007 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1938 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3548 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-252 (score: 0.205)
  • ZDB-GENE-040625-174 (score: 0.205)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231288 (score: 1.000; bootstrap: 100%)
  • DDB0231294 (score: 0.363)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027291 (score: 1.000; bootstrap: 100%)
  • FBgn0052026 (score: 0.467)
  • FBgn0038922 (score: 0.182)
  • FBgn0035005 (score: 0.148)
  • FBgn0039358 (score: 0.148)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11495-PA (score: 1.000; bootstrap: 100%)
  • GA16620-PA (score: 0.500)
  • GA19594-PA (score: 0.212)
  • GA17474-PA (score: 0.175)
  • GA18606-PA (score: 0.169)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000005224 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000023363 (score: 0.052)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000299518 (score: 1.000; bootstrap: 100%)
  • ENSP00000245969 (score: 0.188)
  • ENSP00000217901 (score: 0.184)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000014584 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000010659 (score: 0.179)
  • ENSMODP00000006416 (score: 0.149)

From Inparanoid:20070104

Mus musculus

  • MGI:1915084 (score: 1.000; bootstrap: 100%)
  • MGI:2158650 (score: 0.192)
  • MGI:1099463 (score: 0.181)
  • MGI:2142174 (score: 0.133)

From Inparanoid:20070104

Oryza gramene

  • Q6ZI55 (score: 1.000; bootstrap: 100%)
  • Q7XK23 (score: 0.817)
  • Q5U8V3 (score: 0.563)
  • Q9SDG5 (score: 0.294)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000012542 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000022566 (score: 0.197)
  • ENSPTRP00000038951 (score: 0.106)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015102 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000009681 (score: 0.196)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR136W (score: 1.000; bootstrap: 100%)
  • YNL037C (score: 0.198)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC9025c (score: 1.000; bootstrap: 100%)
  • SPAC11G73 (score: 0.206)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129247 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000168718 (score: 0.222)
  • NEWSINFRUP00000161887 (score: 0.198)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015984001 (score: 1.000; bootstrap: 100%)
  • GSTENP00028116001 (score: 0.175)
  • GSTENP00020960001 (score: 0.166)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000021703 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ICDA

From SHIGELLACYC

E. coli O157

ICDA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00180 Isocitrate/isopropylmalate dehydrogenase

Panther (EcoliWiki Page)

PTHR11835:SF18

Superfamily (EcoliWiki Page)

SUPERFAMILY:53659

PFAM (EcoliWiki Page)

PFAM:PF00180

EcoCyc

EcoCyc:EG10489

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10489

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000482

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0484

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003823

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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